# L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model

## Documentation for package ‘penalized’ version 0.9-53

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

as.data.frame-method | Breslow estimator object
as.data.frame-method | Penalized regression object
as.list-method | Breslow estimator object
as.matrix-method | Breslow estimator object
basehaz-method | Penalized regression object
basesurv | Penalized regression object
basesurv-method | Penalized regression object
breslow | Breslow estimator object
breslow-class | Breslow estimator object
coef-method | Penalized regression object
coefficients-method | Penalized regression object
contr.diff | Contrast functions for penalized regression
contr.none | Contrast functions for penalized regression
cvl | Cross-validated penalized regression
fitted-method | Penalized regression object
fitted.values-method | Penalized regression object
linear.predictors | Penalized regression object
linear.predictors-method | Penalized regression object
loglik | Penalized regression object
loglik-method | Penalized regression object
nki70 | The 70 gene signature of the Netherlands Cancer Institute for prediction of metastasis-free survival, measured on 144 independent lymph node positive patients.
optL1 | Cross-validated penalized regression
optL2 | Cross-validated penalized regression
penalized | Penalized regression
penalty | Penalized regression object
penalty-method | Penalized regression object
penfit | Penalized regression object
penfit-class | Penalized regression object
plot-method | Breslow estimator object
plotpath | Plotting the LASSO path
predict | Prediction based on penfit objects
predict-method | Prediction based on penfit objects
profL1 | Cross-validated penalized regression
profL2 | Cross-validated penalized regression
residuals-method | Penalized regression object
show-method | Breslow estimator object
show-method | Penalized regression object
survival | Breslow estimator object
survival-method | Breslow estimator object
time-method | Breslow estimator object
weights-method | Penalized regression object
[-method | Breslow estimator object
[[-method | Breslow estimator object