| compare_loop_list | Compare two loop lists |
| find_edge | Detecting loops with a certain edge |
| find_loops | Loop detection in a matrix |
| find_loops_noscc | Loop detection in a matrix |
| find_loops_vset | Loop detection for an ODE model at multiple sets of variables |
| func_li08 | Example ODE function: bacterial cell cycle. |
| func_POSm4 | Example ODE function: chain model with positive regulation. |
| li08_solution | Solution for the cell cycle model related to func_li08 |
| loop_summary | Summary of a loop list |
| sort_loop_index | Sort loop indices |