| aspatial_siri | Helper Function for Seasonal SIRI Simulation |
| bsl_raster | Raster of breeding season length for the house finch |
| check_aspatial_siri_inputs | Helper function to check the validity of inputs to the 'siri_model_summer' and 'siri_model_winter' functions. |
| check_simulator_inputs | Helper function to check the validity of inputs to the 'disease_simulator' function. |
| DiseaseModel | R6 class representing a disease model of the _Mycoplasma gallisepticum_ outbreak in _Haemorhous mexicanus_ |
| disease_dispersal | Nested functions for population dispersal in a disease ecology simulation. |
| disease_results | Nested functions for initializing, calculating and collecting disease simulator results. |
| disease_simulator | Stage-based seasonal spatially explicit population-level disease model. |
| disease_transformation | Nested functions for a user-defined transformation of a population affected by a disease outbreak. |
| disease_transitions | Nested functions for stage- and compartment-based population transitions in an outbreak. |
| finch_region | Study region for house finch conjunctivitis simulations |
| habitat_suitability | House finch habitat suitability |
| initial_abundance | Initial house finch abundance |
| siri_model_summer | Simulate a _Mycoplasma gallisepticum_ Outbreak in the Breeding Season |
| siri_model_winter | Simulate a _Mycoplasma gallisepticum_ Outbreak in the Non-Breeding Season |