Last updated on 2025-12-01 03:54:31 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 36.03 | 519.10 | 555.13 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 22.65 | 245.16 | 267.81 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 173.00 | 722.55 | 895.55 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 145.00 | 755.33 | 900.33 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 31.07 | 501.73 | 532.80 | ERROR | |
| r-release-linux-x86_64 | 1.0.1 | 33.06 | 498.33 | 531.39 | OK | |
| r-release-macos-arm64 | 1.0.1 | 8.00 | 245.00 | 253.00 | OK | |
| r-release-macos-x86_64 | 1.0.1 | 26.00 | 402.00 | 428.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 8.00 | 295.00 | 303.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.1 | 36.00 | 425.00 | 461.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.1 | 50.00 | 651.00 | 701.00 | OK |
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/30s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(EcoCleanR)
>
> test_check("EcoCleanR")
== 1 queries ===============
Retrieving data for taxon 'Mexacanthina lugubris'
✔ Found: Mexacanthina lugubris
== Results =================
• Total: 1
• Found: 1
• Not Found: 0
Suggested threshold at 96th percentile: 8801832
Saving _problems/test-data_cleaning-162.R
Extracting BO_sstmean...
Imputation iteration 1
Imputation iteration 2
No more missing values to impute.
trying URL 'https://geodata.ucdavis.edu/gadm/gadm3.6/gadm36_adm0_r3_pk.rds'
Content type 'unknown' length 2438344 bytes (2.3 MB)
==================================================
downloaded 2.3 MB
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 31 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• Skipping ec_flag_non_east_atlantic test - big shape files required to load
for it (1): 'test-data_cleaning.R:417:3'
• Skipping ec_flag_non_west_atlantic test - big shape files required to load
for it (1): 'test-data_cleaning.R:438:3'
• Skipping ec_flag_non_west_pacific test - big shape files required to load for
it (1): 'test-data_cleaning.R:459:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-data_cleaning.R:162:3'): ec_flag_non_region works ──────────────
Error in `mrp_get_sanity_check(.)`: ! HTTP 400 Bad Request
i Exception Code: NoApplicableCode
i Exception Text: java.nio.BufferOverflowException
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-data_cleaning.R:162:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─EcoCleanR::ec_flag_non_region(direction, ocean, buffer, test_data4)
5. │ └─EcoCleanR (local) flag_function(...)
6. │ └─base::lapply(...)
7. │ └─EcoCleanR (local) FUN(X[[i]], ...)
8. │ └─mregions2::mrp_get(...)
9. │ └─... %>% mrp_get_sanity_check()
10. └─mregions2:::mrp_get_sanity_check(.)
11. └─cli::cli_abort(msg)
12. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 31 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘data_cleaning.Rmd’ using rmarkdown
trying URL 'https://geodata.ucdavis.edu/gadm/gadm3.6/gadm36_adm0_r3_pk.rds'
Content type 'unknown' length 2438344 bytes (2.3 MB)
==================================================
downloaded 2.3 MB
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘data_cleaning.Rmd’
--- re-building ‘data_merging.Rmd’ using rmarkdown
Quitting from data_merging.Rmd:26-32 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'robis'
---
Backtrace:
▆
1. └─base::library(robis)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'data_merging.Rmd' failed with diagnostics:
there is no package called 'robis'
--- failed re-building ‘data_merging.Rmd’
SUMMARY: processing the following file failed:
‘data_merging.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64