Last updated on 2025-01-19 05:49:16 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 5.26 | 703.16 | 708.42 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 3.50 | 483.33 | 486.83 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 972.11 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 766.23 | OK | |||
| r-devel-windows-x86_64 | 0.1.1 | 6.00 | 536.00 | 542.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 4.48 | 658.33 | 662.81 | ERROR | |
| r-release-linux-x86_64 | 0.1.0 | 4.70 | 663.98 | 668.68 | OK | |
| r-release-macos-arm64 | 0.1.0 | 199.00 | OK | |||
| r-release-macos-x86_64 | 0.1.0 | 330.00 | OK | |||
| r-release-windows-x86_64 | 0.1.0 | 8.00 | 536.00 | 544.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.1.0 | 224.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.0 | 349.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.1 | 7.00 | 642.00 | 649.00 | OK |
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a01_DatabaseDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘a01_DatabaseDiagnostics.Rmd’
--- re-building ‘a02_CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 61-63 [unnamed-chunk-3] (a02_CodelistDiagnostics.Rmd)
Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics:
unused argument (settingsColumns = settingsColumns)
--- failed re-building ‘a02_CodelistDiagnostics.Rmd’
--- re-building ‘a03_CohortDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PhenotypeR.Rcheck/vign_test/PhenotypeR/vignettes/a03_CohortDiagnostics_files/figure-html/unnamed-chunk-5-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25275 bytes
Input file size = 25389 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19669
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19669
Output IDAT size = 19669 bytes (5606 bytes decrease)
Output file size = 19747 bytes (5642 bytes = 22.22% decrease)
--- finished re-building ‘a03_CohortDiagnostics.Rmd’
--- re-building ‘a04_MatchedDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘a04_MatchedDiagnostics.Rmd’
--- re-building ‘a05_PopulationDiagnostics.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
Defaulting to 'a05_PopulationDiagnostics.knit' as the title.
To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building ‘a05_PopulationDiagnostics.Rmd’
SUMMARY: processing the following file failed:
‘a02_CodelistDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a01_DatabaseDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘a01_DatabaseDiagnostics.Rmd’
--- re-building ‘a02_CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 61-63 [unnamed-chunk-3] (a02_CodelistDiagnostics.Rmd)
Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics:
unused argument (settingsColumns = settingsColumns)
--- failed re-building ‘a02_CodelistDiagnostics.Rmd’
--- re-building ‘a03_CohortDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PhenotypeR.Rcheck/vign_test/PhenotypeR/vignettes/a03_CohortDiagnostics_files/figure-html/unnamed-chunk-5-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25275 bytes
Input file size = 25389 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19669
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19669
Output IDAT size = 19669 bytes (5606 bytes decrease)
Output file size = 19747 bytes (5642 bytes = 22.22% decrease)
--- finished re-building ‘a03_CohortDiagnostics.Rmd’
--- re-building ‘a04_MatchedDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘a04_MatchedDiagnostics.Rmd’
--- re-building ‘a05_PopulationDiagnostics.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
Defaulting to 'a05_PopulationDiagnostics.knit' as the title.
To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building ‘a05_PopulationDiagnostics.Rmd’
SUMMARY: processing the following file failed:
‘a02_CodelistDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'a01_DatabaseDiagnostics.Rmd' using rmarkdown
--- finished re-building 'a01_DatabaseDiagnostics.Rmd'
--- re-building 'a02_CodelistDiagnostics.Rmd' using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 61-63 [unnamed-chunk-3] (a02_CodelistDiagnostics.Rmd)
Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics:
unused argument (settingsColumns = settingsColumns)
--- failed re-building 'a02_CodelistDiagnostics.Rmd'
--- re-building 'a03_CohortDiagnostics.Rmd' using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building 'a03_CohortDiagnostics.Rmd'
--- re-building 'a04_MatchedDiagnostics.Rmd' using rmarkdown
--- finished re-building 'a04_MatchedDiagnostics.Rmd'
--- re-building 'a05_PopulationDiagnostics.Rmd' using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
Defaulting to 'a05_PopulationDiagnostics.knit' as the title.
To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building 'a05_PopulationDiagnostics.Rmd'
SUMMARY: processing the following file failed:
'a02_CodelistDiagnostics.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64