Last updated on 2025-02-14 13:50:11 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.3 | 8.44 | 179.75 | 188.19 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.3 | 5.43 | 117.26 | 122.69 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.1.3 | 323.30 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.3 | 293.30 | OK | |||
| r-devel-windows-x86_64 | 2.1.3 | 10.00 | 365.00 | 375.00 | OK | |
| r-patched-linux-x86_64 | 2.1.3 | 7.66 | 169.88 | 177.54 | OK | |
| r-release-linux-x86_64 | 2.1.3 | 7.84 | 167.29 | 175.13 | OK | |
| r-release-macos-arm64 | 2.1.3 | 232.00 | OK | |||
| r-release-macos-x86_64 | 2.1.3 | 311.00 | OK | |||
| r-release-windows-x86_64 | 2.1.3 | 10.00 | 342.00 | 352.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.3 | 232.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.1.3 | 323.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.1.3 | 13.00 | 405.00 | 418.00 | ERROR |
Version: 2.1.3
Check: tests
Result: ERROR
Running 'testthat.R' [64s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(PubChemR)
>
> # Functions used globally in package tests (testthat) ----
> allSuccess <- function(object){
+ all(unlist(lapply(object$result, "[[", "success")))
+ }
>
> testRequest <- function(object, ...){
+ test_that(paste0("pulling via '", request_args(object, "namespace"), "' is succesfull"), {
+ expect_true(allSuccess(object))
+ })
+
+ test_that("prints output to the R Console", {
+ expect_output(print(object))
+ })
+ }
>
> # Set 'skipTests' FALSE to run test codes. This is set TRUE to skip
> # all tests on GitHub actions since some of PubChem requests were incomplete due to
> # timeout and/or API related issues. BUILD & CHECK actions on GitHub returns error
> # even if all tests were passed on local installations of R.
> skipTests <- FALSE
>
> if (!skipTests){
+ test_check("PubChemR")
+ }
The file has been saved to 'D:\temp\2025_02_12_01_50_00_17817\RtmpyYPNeM/aspirin.json'
The file has been saved to 'D:\temp\2025_02_12_01_50_00_17817\RtmpyYPNeM/aspirin.json'
The file has been saved to 'D:\temp\2025_02_12_01_50_00_17817\RtmpyYPNeM/aspirin.json'
The file has been saved to 'D:\temp\2025_02_12_01_50_00_17817\RtmpyYPNeM/aspirin.json'
The file has been saved to 'D:\temp\2025_02_12_01_50_00_17817\RtmpyYPNeM/aspirin.sdf'
Request failed [400]. Retrying in 3.8 seconds...
Request failed [400]. Retrying in 3.7 seconds...
SDF file saved successfully:
File Name: 'aspirin_20250212_085705.sdf'
Saved at: D:\temp\2025_02_12_01_50_00_17817\RtmpyYPNeM
SDF file saved successfully:
File Name: 'file.sdf'
Saved at: D:\temp\2025_02_12_01_50_00_17817\RtmpyYPNeM
'path' is not specified. Saving files into a temporary folder.
SDF file saved successfully:
File Name: 'file.sdf'
Saved at: D:\temp\2025_02_12_01_50_00_17817\RtmpyYPNeM
PubChem Substance Details (comment)
Same as: <a href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=7847177">D00109</a>
Is a reactant of enzyme EC: 3.1.1.55
PubChem Substance Details (comment)
Same as: <a href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=7847177">D00109</a>
Is a reactant of enzyme EC: 3.1.1.55
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 202 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_sids.R:20:5'): pulling sids via 'smiles' is succesfull ───
allSuccess(object) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-get_sids.R:53:3'): pulling sids for multiple identifiers with undefined input. ──
sids$result[[1]]$success is not TRUE
`actual` is NULL
`expected` is a logical vector (TRUE)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 202 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64