CRAN Package Check Results for Package RGCxGC

Last updated on 2019-10-18 12:47:49 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.0 6.23 84.81 91.04 OK
r-devel-linux-x86_64-debian-gcc 1.0.0 5.37 61.22 66.59 OK
r-devel-linux-x86_64-fedora-clang 1.0.0 107.26 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.0 106.04 NOTE
r-devel-windows-ix86+x86_64 1.0.0 20.00 89.00 109.00 OK
r-patched-linux-x86_64 1.0.0 5.53 81.52 87.05 OK
r-patched-solaris-x86 1.0.0 75.30 ERROR
r-release-linux-x86_64 1.0.0 6.48 81.12 87.60 OK
r-release-windows-ix86+x86_64 1.0.0 10.00 85.00 95.00 OK
r-release-osx-x86_64 1.0.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0.0 9.00 107.00 116.00 OK
r-oldrel-osx-x86_64 1.0.0 NOTE

Check Details

Version: 1.0.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘prettydoc’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in ‘RGCxGC-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: baseline_corr
    > ### Title: Bidimensional baseline correction
    > ### Aliases: baseline_corr
    >
    > ### ** Examples
    >
    > library(colorRamps)
    > chrom_name <- system.file("extdata", "08GB.cdf", package = "RGCxGC")
    > chrom_2D <- read_chrom(chrom_name, 5L)
    Error in RNetCDF::open.nc(object@name) : NetCDF: HDF error
    Calls: read_chrom ... anyStrings -> isTRUE -> validityMethod -> <Anonymous>
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘Explanation.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 109-112 (Explanation.Rmd)
    Error: processing vignette 'Explanation.Rmd' failed with diagnostics:
    NetCDF: HDF error
    --- failed re-building ‘Explanation.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Explanation.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86