Last updated on 2025-01-19 05:49:03 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.3 | 12.38 | 128.74 | 141.12 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.6.3 | 9.07 | 81.46 | 90.53 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.6.3 | 179.70 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.6.3 | 180.16 | ERROR | |||
| r-devel-windows-x86_64 | 0.6.3 | 13.00 | 138.00 | 151.00 | NOTE | |
| r-patched-linux-x86_64 | 0.6.3 | 19.55 | 116.89 | 136.44 | OK | |
| r-release-linux-x86_64 | 0.6.3 | 10.83 | 116.84 | 127.67 | OK | |
| r-release-macos-arm64 | 0.6.3 | 67.00 | OK | |||
| r-release-macos-x86_64 | 0.6.3 | 99.00 | OK | |||
| r-release-windows-x86_64 | 0.6.3 | 14.00 | 139.00 | 153.00 | OK | |
| r-oldrel-macos-arm64 | 0.6.3 | 60.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.6.3 | 168.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.6.3 | 15.00 | 162.00 | 177.00 | ERROR |
Version: 0.6.3
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
normGeometry.Rd: st_drivers
normTable.Rd: reorganise
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 0.6.3
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Note: possible error in 'edit_matches(new = externalConcepts$label, ': unused argument (target = externalConcepts %>% select(has_broader, class))
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/arealDB.Rcheck/00install.out’ for details.
Information on the location(s) of code generating the ‘Note’s can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to ‘yes’.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.3
Check: R code for possible problems
Result: NOTE
matchOntology: possible error in edit_matches(new =
externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep): unused argument (target = externalConcepts %>%
select(has_broader, class))
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64
Version: 0.6.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("arealDB")
Loading required package: arealDB
[ FAIL 5 | WARN 1 | SKIP 4 | PASS 62 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• empty test (4): 'test_matchOntology.R:7:1', 'test_matchOntology.R:12:1',
'test_matchOntology.R:17:1', 'test_matchOntology.R:22:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_01_makeExampleDB.R:89:3'): make example DB until normGeometry ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_01_makeExampleDB.R:89:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_01_makeExampleDB.R:99:3'): make example DB until normTable ─────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normTable", path = dbpath) at test_01_makeExampleDB.R:99:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_06_normGeometry.R:16:3'): geometries can be normalised ─────────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::normGeometry(...) at test_06_normGeometry.R:16:3
2. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:13:3'): tables can be normalised (without matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:13:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:42:3'): tables can be normalised (with matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:42:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
[ FAIL 5 | WARN 1 | SKIP 4 | PASS 62 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.3
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Note: possible error in 'edit_matches(new = externalConcepts$label, ': unused argument (target = externalConcepts %>% select(has_broader, class))
See ‘/data/gannet/ripley/R/packages/tests-clang/arealDB.Rcheck/00install.out’ for details.
Information on the location(s) of code generating the ‘Note’s can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to ‘yes’.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.6.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("arealDB")
Loading required package: arealDB
[ FAIL 5 | WARN 0 | SKIP 4 | PASS 62 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• empty test (4): 'test_matchOntology.R:7:1', 'test_matchOntology.R:12:1',
'test_matchOntology.R:17:1', 'test_matchOntology.R:22:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_01_makeExampleDB.R:89:3'): make example DB until normGeometry ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_01_makeExampleDB.R:89:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_01_makeExampleDB.R:99:3'): make example DB until normTable ─────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normTable", path = dbpath) at test_01_makeExampleDB.R:99:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_06_normGeometry.R:16:3'): geometries can be normalised ─────────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::normGeometry(...) at test_06_normGeometry.R:16:3
2. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:13:3'): tables can be normalised (without matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:13:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:42:3'): tables can be normalised (with matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:42:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
[ FAIL 5 | WARN 0 | SKIP 4 | PASS 62 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.6.3
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Note: possible error in 'edit_matches(new = externalConcepts$label, ': unused argument (target = externalConcepts %>% select(has_broader, class))
See ‘/data/gannet/ripley/R/packages/tests-devel/arealDB.Rcheck/00install.out’ for details.
Information on the location(s) of code generating the ‘Note’s can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to ‘yes’.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.6.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/40s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("arealDB")
Loading required package: arealDB
[ FAIL 5 | WARN 0 | SKIP 4 | PASS 62 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• empty test (4): 'test_matchOntology.R:7:1', 'test_matchOntology.R:12:1',
'test_matchOntology.R:17:1', 'test_matchOntology.R:22:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_01_makeExampleDB.R:89:3'): make example DB until normGeometry ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_01_makeExampleDB.R:89:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_01_makeExampleDB.R:99:3'): make example DB until normTable ─────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normTable", path = dbpath) at test_01_makeExampleDB.R:99:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_06_normGeometry.R:16:3'): geometries can be normalised ─────────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::normGeometry(...) at test_06_normGeometry.R:16:3
2. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:13:3'): tables can be normalised (without matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:13:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:42:3'): tables can be normalised (with matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:42:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
[ FAIL 5 | WARN 0 | SKIP 4 | PASS 62 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.6.3
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Note: possible error in 'edit_matches(new = externalConcepts$label, ': unused argument (target = externalConcepts %>% select(has_broader, class))
See 'd:/Rcompile/CRANpkg/local/4.3/arealDB.Rcheck/00install.out' for details.
Information on the location(s) of code generating the 'Note's can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to 'yes'.
Flavor: r-oldrel-windows-x86_64
Version: 0.6.3
Check: tests
Result: ERROR
Running 'testthat.R' [20s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> test_check("arealDB")
Loading required package: arealDB
[ FAIL 5 | WARN 0 | SKIP 4 | PASS 62 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• empty test (4): 'test_matchOntology.R:7:1', 'test_matchOntology.R:12:1',
'test_matchOntology.R:17:1', 'test_matchOntology.R:22:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_01_makeExampleDB.R:89:3'): make example DB until normGeometry ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_01_makeExampleDB.R:89:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_01_makeExampleDB.R:99:3'): make example DB until normTable ─────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normTable", path = dbpath) at test_01_makeExampleDB.R:99:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_06_normGeometry.R:16:3'): geometries can be normalised ─────────
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::normGeometry(...) at test_06_normGeometry.R:16:3
2. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:13:3'): tables can be normalised (without matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:13:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
── Error ('test_07_normTable.R:42:3'): tables can be normalised (with matched variables) ──
Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>%
select(has_broader, class), source = dataseries, ontology = ontology,
matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
Backtrace:
▆
1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:42:3
2. └─arealDB::normGeometry(update = TRUE, verbose = verbose)
3. └─arealDB::matchOntology(...)
[ FAIL 5 | WARN 0 | SKIP 4 | PASS 62 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64