Last updated on 2025-02-26 14:54:17 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.6.6 | 18.17 | 335.82 | 353.99 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 3.6.6 | 11.71 | 211.57 | 223.28 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.6.6 | 545.50 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 3.6.6 | 524.94 | ERROR | |||
| r-devel-macos-arm64 | 3.6.6 | 117.00 | OK | |||
| r-devel-macos-x86_64 | 3.6.6 | 282.00 | OK | |||
| r-devel-windows-x86_64 | 3.6.6 | 26.00 | 352.00 | 378.00 | OK | |
| r-patched-linux-x86_64 | 3.6.6 | 16.71 | 326.88 | 343.59 | OK | |
| r-release-linux-x86_64 | 3.6.6 | 16.19 | 322.27 | 338.46 | OK | |
| r-release-macos-arm64 | 3.6.6 | 158.00 | OK | |||
| r-release-macos-x86_64 | 3.6.6 | 312.00 | OK | |||
| r-release-windows-x86_64 | 3.6.6 | 25.00 | 349.00 | 374.00 | OK | |
| r-oldrel-macos-arm64 | 3.6.6 | 112.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 3.6.6 | 313.00 | OK | |||
| r-oldrel-windows-x86_64 | 3.6.6 | 29.00 | 456.00 | 485.00 | OK |
Version: 3.6.6
Check: examples
Result: ERROR
Running examples in ‘gsDesign-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as_rtf
> ### Title: Save a summary table object as an RTF file
> ### Aliases: as_rtf as_rtf.gsBinomialExactTable as_rtf.gsBoundSummary
>
> ### ** Examples
>
> # as_rtf for gsBinomialExact
> zz <- gsBinomialExact(
+ k = 3, theta = seq(0.1, 0.9, 0.1), n.I = c(12, 24, 36),
+ a = c(-1, 0, 11), b = c(5, 9, 12)
+ )
> zz %>%
+ as_table() %>%
+ as_rtf(
+ file = tempfile(fileext = ".rtf"),
+ title = "Power/Type I Error and Expected Sample Size for a Group Sequential Design"
+ )
>
> safety_design <- binomialSPRT(
+ p0 = .04, p1 = .1, alpha = .04, beta = .2, minn = 4, maxn = 75
+ )
> safety_power <- gsBinomialExact(
+ k = length(safety_design$n.I),
+ theta = seq(.02, .16, .02),
+ n.I = safety_design$n.I,
+ a = safety_design$lower$bound,
+ b = safety_design$upper$bound
+ )
> safety_power %>%
+ as_table() %>%
+ as_rtf(
+ file = tempfile(fileext = ".rtf"),
+ theta_label = "Underlying\nAE Rate",
+ prob_decimals = 3,
+ bound_label = c("Low Rate", "High Rate")
+ )
> # as_rtf for gsBoundSummary
> xgs <- gsSurv(lambdaC = .2, hr = .5, eta = .1, T = 2, minfup = 1.5)
> gsBoundSummary(xgs, timename = "Year", tdigits = 1) %>% as_rtf(file = tempfile(fileext = ".rtf"))
Error in unlist(attr(text, "text_indent_first"), attr(text, "text_indent_left"), :
'recursive' must be a length-1 vector
Calls: %>% ... rtf_encode_table -> paste -> as_rtf_footnote -> unlist
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 3.6.6
Check: examples
Result: ERROR
Running examples in ‘gsDesign-Ex.R’ failed
The error most likely occurred in:
> ### Name: as_rtf
> ### Title: Save a summary table object as an RTF file
> ### Aliases: as_rtf as_rtf.gsBinomialExactTable as_rtf.gsBoundSummary
>
> ### ** Examples
>
> # as_rtf for gsBinomialExact
> zz <- gsBinomialExact(
+ k = 3, theta = seq(0.1, 0.9, 0.1), n.I = c(12, 24, 36),
+ a = c(-1, 0, 11), b = c(5, 9, 12)
+ )
> zz %>%
+ as_table() %>%
+ as_rtf(
+ file = tempfile(fileext = ".rtf"),
+ title = "Power/Type I Error and Expected Sample Size for a Group Sequential Design"
+ )
>
> safety_design <- binomialSPRT(
+ p0 = .04, p1 = .1, alpha = .04, beta = .2, minn = 4, maxn = 75
+ )
> safety_power <- gsBinomialExact(
+ k = length(safety_design$n.I),
+ theta = seq(.02, .16, .02),
+ n.I = safety_design$n.I,
+ a = safety_design$lower$bound,
+ b = safety_design$upper$bound
+ )
> safety_power %>%
+ as_table() %>%
+ as_rtf(
+ file = tempfile(fileext = ".rtf"),
+ theta_label = "Underlying\nAE Rate",
+ prob_decimals = 3,
+ bound_label = c("Low Rate", "High Rate")
+ )
> # as_rtf for gsBoundSummary
> xgs <- gsSurv(lambdaC = .2, hr = .5, eta = .1, T = 2, minfup = 1.5)
> gsBoundSummary(xgs, timename = "Year", tdigits = 1) %>% as_rtf(file = tempfile(fileext = ".rtf"))
Error in unlist(attr(text, "text_indent_first"), attr(text, "text_indent_left"), :
'recursive' must be of length 1
Calls: %>% ... rtf_encode_table -> paste -> as_rtf_footnote -> unlist
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 3.6.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘ConditionalErrorSpending.Rmd’ using rmarkdown
Quitting from lines 54-58 [unnamed-chunk-2] (ConditionalErrorSpending.Rmd)
Error: processing vignette 'ConditionalErrorSpending.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘ConditionalErrorSpending.Rmd’
--- re-building ‘ConditionalPowerPlot.Rmd’ using rmarkdown
Quitting from lines 30-34 [unnamed-chunk-2] (ConditionalPowerPlot.Rmd)
Error: processing vignette 'ConditionalPowerPlot.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘ConditionalPowerPlot.Rmd’
--- re-building ‘GentleIntroductionToGSD.Rmd’ using rmarkdown
Quitting from lines 166-167 [unnamed-chunk-2] (GentleIntroductionToGSD.Rmd)
Error: processing vignette 'GentleIntroductionToGSD.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘GentleIntroductionToGSD.Rmd’
--- re-building ‘GraphicalMultiplicity.Rmd’ using rmarkdown
--- finished re-building ‘GraphicalMultiplicity.Rmd’
--- re-building ‘PoissonMixtureModel.Rmd’ using rmarkdown
Quitting from lines 26-31 [unnamed-chunk-2] (PoissonMixtureModel.Rmd)
Error: processing vignette 'PoissonMixtureModel.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘PoissonMixtureModel.Rmd’
--- re-building ‘SpendingFunctionOverview.Rmd’ using rmarkdown
--- finished re-building ‘SpendingFunctionOverview.Rmd’
--- re-building ‘SurvivalOverview.Rmd’ using rmarkdown
Quitting from lines 30-34 [unnamed-chunk-2] (SurvivalOverview.Rmd)
Error: processing vignette 'SurvivalOverview.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘SurvivalOverview.Rmd’
--- re-building ‘VaccineEfficacy.Rmd’ using rmarkdown
Quitting from lines 28-31 [unnamed-chunk-2] (VaccineEfficacy.Rmd)
Error: processing vignette 'VaccineEfficacy.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘VaccineEfficacy.Rmd’
--- re-building ‘binomialSPRTExample.Rmd’ using rmarkdown
Quitting from lines 47-48 [unnamed-chunk-2] (binomialSPRTExample.Rmd)
Error: processing vignette 'binomialSPRTExample.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘binomialSPRTExample.Rmd’
--- re-building ‘gsDesignPackageOverview.Rmd’ using rmarkdown
Quitting from lines 65-70 [unnamed-chunk-2] (gsDesignPackageOverview.Rmd)
Error: processing vignette 'gsDesignPackageOverview.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘gsDesignPackageOverview.Rmd’
--- re-building ‘gsSurvBasicExamples.Rmd’ using rmarkdown
Quitting from lines 47-60 [unnamed-chunk-2] (gsSurvBasicExamples.Rmd)
Error: processing vignette 'gsSurvBasicExamples.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘gsSurvBasicExamples.Rmd’
--- re-building ‘hGraph.Rmd’ using rmarkdown
--- finished re-building ‘hGraph.Rmd’
--- re-building ‘nNormal.Rmd’ using rmarkdown
Quitting from lines 28-31 [unnamed-chunk-2] (nNormal.Rmd)
Error: processing vignette 'nNormal.Rmd' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘nNormal.Rmd’
--- re-building ‘toInteger.Rmd’ using rmarkdown
--- finished re-building ‘toInteger.Rmd’
SUMMARY: processing the following files failed:
‘ConditionalErrorSpending.Rmd’ ‘ConditionalPowerPlot.Rmd’
‘GentleIntroductionToGSD.Rmd’ ‘PoissonMixtureModel.Rmd’
‘SurvivalOverview.Rmd’ ‘VaccineEfficacy.Rmd’
‘binomialSPRTExample.Rmd’ ‘gsDesignPackageOverview.Rmd’
‘gsSurvBasicExamples.Rmd’ ‘nNormal.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64