Last updated on 2025-02-26 14:54:17 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0 | 6.47 | 74.75 | 81.22 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 4.11 | 52.43 | 56.54 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0 | 143.24 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.0 | 146.22 | ERROR | |||
| r-devel-macos-arm64 | 0.4.0 | 63.00 | OK | |||
| r-devel-macos-x86_64 | 0.4.0 | 121.00 | NOTE | |||
| r-devel-windows-x86_64 | 0.4.0 | 7.00 | 115.00 | 122.00 | NOTE | |
| r-patched-linux-x86_64 | 0.4.0 | 6.51 | 68.47 | 74.98 | ERROR | |
| r-release-linux-x86_64 | 0.4.0 | 3.94 | 67.44 | 71.38 | ERROR | |
| r-release-macos-arm64 | 0.4.0 | 55.00 | OK | |||
| r-release-macos-x86_64 | 0.4.0 | 165.00 | OK | |||
| r-release-windows-x86_64 | 0.4.0 | 7.00 | 83.00 | 90.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.4.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.4.0 | 149.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.4.0 | 10.00 | 99.00 | 109.00 | ERROR |
Version: 0.4.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘selectors.R’ ‘utils-tbl_ae.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64, r-devel-windows-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [28s/38s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gtreg)
Attaching package: 'gtreg'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtreg")
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-add_overall.R:1:1', 'test-style_xxx.R:110:3',
'test-tbl_ae.R:1:1', 'test-tbl_ae_count.R:1:1', 'test-tbl_ae_focus.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inline_text.R:2:3'): inline text works ─────────────────────────
Error in `UseMethod("filter")`: no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-inline_text.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% inline_text(row = "Anaemia", column = stat_5)
5. ├─gtsummary::inline_text(., row = "Anaemia", column = stat_5)
6. └─gtreg::tbl_ae(., id = patient_id, ae = adverse_event, by = grade)
7. └─gtreg:::.construct_summary_table(...)
8. └─gtreg (local) .final_summary_fun(data)
9. └─gtreg:::.build_single_summary_table(...)
10. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Error ('test-modify_header.R:2:3'): modify_header() works ───────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(., tbl = switch(.parent_fun, tbl_strata = map(.data$data,
.tbl_fun, ...), tbl_strata2 = map2(.data$data, .data$header,
.tbl_fun, ...)))`: i In argument: `tbl = switch(...)`.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─... %>% ... at test-modify_header.R:2:3
2. ├─gtreg::tbl_ae(...)
3. │ └─gtreg:::.construct_summary_table(...)
4. │ └─gtsummary::tbl_strata(...)
5. │ └─gtsummary:::tbl_strata_internal(...)
6. │ └─... %>% ...
7. ├─dplyr::mutate(...)
8. ├─dplyr:::mutate.data.frame(...)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─gtsummary:::map(.data$data, .tbl_fun, ...)
15. │ └─base::lapply(.x, .f, ...)
16. │ └─gtreg (local) FUN(X[[i]], ...)
17. │ └─gtreg (local) .final_summary_fun(data = .x)
18. │ └─gtreg:::.build_single_summary_table(...)
19. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
20. └─base::.handleSimpleError(...)
21. └─dplyr (local) h(simpleError(msg, call))
22. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Failure ('test-style_xxx.R:22:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:22:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:38:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:38:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae_count(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:52:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: i In index: 1.
i With name: any_complication.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Class: purrr_error_indexed/rlang_error/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:52:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtreg::tbl_ae_focus(...)
10. │ └─... %>% gtsummary::tbl_merge(tab_spanner = FALSE)
11. ├─gtsummary::tbl_merge(., tab_spanner = FALSE)
12. ├─purrr::imap(...)
13. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
14. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─gtreg (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─gtreg:::.construct_summary_table(...)
20. │ └─gtreg (local) .final_summary_fun(data)
21. │ └─gtreg:::.build_single_summary_table(...)
22. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
23. └─base::.handleSimpleError(...)
24. └─purrr (local) h(simpleError(msg, call))
25. └─cli::cli_abort(...)
26. └─rlang::abort(...)
── Error ('test-style_xxx.R:67:3'): style_xxx works with tbl_ae family ─────────
Error: object 't1' not found
Backtrace:
▆
1. └─testthat::expect_snapshot(as.data.frame(t1)) at test-style_xxx.R:67:3
2. └─rlang::cnd_signal(state$error)
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [18s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gtreg)
Attaching package: 'gtreg'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtreg")
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-add_overall.R:1:1', 'test-style_xxx.R:110:3',
'test-tbl_ae.R:1:1', 'test-tbl_ae_count.R:1:1', 'test-tbl_ae_focus.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inline_text.R:2:3'): inline text works ─────────────────────────
Error in `UseMethod("filter")`: no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-inline_text.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% inline_text(row = "Anaemia", column = stat_5)
5. ├─gtsummary::inline_text(., row = "Anaemia", column = stat_5)
6. └─gtreg::tbl_ae(., id = patient_id, ae = adverse_event, by = grade)
7. └─gtreg:::.construct_summary_table(...)
8. └─gtreg (local) .final_summary_fun(data)
9. └─gtreg:::.build_single_summary_table(...)
10. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Error ('test-modify_header.R:2:3'): modify_header() works ───────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(., tbl = switch(.parent_fun, tbl_strata = map(.data$data,
.tbl_fun, ...), tbl_strata2 = map2(.data$data, .data$header,
.tbl_fun, ...)))`: i In argument: `tbl = switch(...)`.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─... %>% ... at test-modify_header.R:2:3
2. ├─gtreg::tbl_ae(...)
3. │ └─gtreg:::.construct_summary_table(...)
4. │ └─gtsummary::tbl_strata(...)
5. │ └─gtsummary:::tbl_strata_internal(...)
6. │ └─... %>% ...
7. ├─dplyr::mutate(...)
8. ├─dplyr:::mutate.data.frame(...)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─gtsummary:::map(.data$data, .tbl_fun, ...)
15. │ └─base::lapply(.x, .f, ...)
16. │ └─gtreg (local) FUN(X[[i]], ...)
17. │ └─gtreg (local) .final_summary_fun(data = .x)
18. │ └─gtreg:::.build_single_summary_table(...)
19. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
20. └─base::.handleSimpleError(...)
21. └─dplyr (local) h(simpleError(msg, call))
22. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Failure ('test-style_xxx.R:22:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:22:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:38:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:38:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae_count(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:52:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: i In index: 1.
i With name: any_complication.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Class: purrr_error_indexed/rlang_error/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:52:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtreg::tbl_ae_focus(...)
10. │ └─... %>% gtsummary::tbl_merge(tab_spanner = FALSE)
11. ├─gtsummary::tbl_merge(., tab_spanner = FALSE)
12. ├─purrr::imap(...)
13. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
14. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─gtreg (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─gtreg:::.construct_summary_table(...)
20. │ └─gtreg (local) .final_summary_fun(data)
21. │ └─gtreg:::.build_single_summary_table(...)
22. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
23. └─base::.handleSimpleError(...)
24. └─purrr (local) h(simpleError(msg, call))
25. └─cli::cli_abort(...)
26. └─rlang::abort(...)
── Error ('test-style_xxx.R:67:3'): style_xxx works with tbl_ae family ─────────
Error: object 't1' not found
Backtrace:
▆
1. └─testthat::expect_snapshot(as.data.frame(t1)) at test-style_xxx.R:67:3
2. └─rlang::cnd_signal(state$error)
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [48s/171s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gtreg)
Attaching package: 'gtreg'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtreg")
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-add_overall.R:1:1', 'test-style_xxx.R:110:3',
'test-tbl_ae.R:1:1', 'test-tbl_ae_count.R:1:1', 'test-tbl_ae_focus.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inline_text.R:2:3'): inline text works ─────────────────────────
Error in `UseMethod("filter")`: no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-inline_text.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% inline_text(row = "Anaemia", column = stat_5)
5. ├─gtsummary::inline_text(., row = "Anaemia", column = stat_5)
6. └─gtreg::tbl_ae(., id = patient_id, ae = adverse_event, by = grade)
7. └─gtreg:::.construct_summary_table(...)
8. └─gtreg (local) .final_summary_fun(data)
9. └─gtreg:::.build_single_summary_table(...)
10. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Error ('test-modify_header.R:2:3'): modify_header() works ───────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(., tbl = switch(.parent_fun, tbl_strata = map(.data$data,
.tbl_fun, ...), tbl_strata2 = map2(.data$data, .data$header,
.tbl_fun, ...)))`: i In argument: `tbl = switch(...)`.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─... %>% ... at test-modify_header.R:2:3
2. ├─gtreg::tbl_ae(...)
3. │ └─gtreg:::.construct_summary_table(...)
4. │ └─gtsummary::tbl_strata(...)
5. │ └─gtsummary:::tbl_strata_internal(...)
6. │ └─... %>% ...
7. ├─dplyr::mutate(...)
8. ├─dplyr:::mutate.data.frame(...)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─gtsummary:::map(.data$data, .tbl_fun, ...)
15. │ └─base::lapply(.x, .f, ...)
16. │ └─gtreg (local) FUN(X[[i]], ...)
17. │ └─gtreg (local) .final_summary_fun(data = .x)
18. │ └─gtreg:::.build_single_summary_table(...)
19. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
20. └─base::.handleSimpleError(...)
21. └─dplyr (local) h(simpleError(msg, call))
22. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Failure ('test-style_xxx.R:22:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:22:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:38:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:38:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae_count(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:52:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: i In index: 1.
i With name: any_complication.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Class: purrr_error_indexed/rlang_error/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:52:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtreg::tbl_ae_focus(...)
10. │ └─... %>% gtsummary::tbl_merge(tab_spanner = FALSE)
11. ├─gtsummary::tbl_merge(., tab_spanner = FALSE)
12. ├─purrr::imap(...)
13. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
14. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─gtreg (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─gtreg:::.construct_summary_table(...)
20. │ └─gtreg (local) .final_summary_fun(data)
21. │ └─gtreg:::.build_single_summary_table(...)
22. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
23. └─base::.handleSimpleError(...)
24. └─purrr (local) h(simpleError(msg, call))
25. └─cli::cli_abort(...)
26. └─rlang::abort(...)
── Error ('test-style_xxx.R:67:3'): style_xxx works with tbl_ae family ─────────
Error: object 't1' not found
Backtrace:
▆
1. └─testthat::expect_snapshot(as.data.frame(t1)) at test-style_xxx.R:67:3
2. └─rlang::cnd_signal(state$error)
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [43s/114s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gtreg)
Attaching package: 'gtreg'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtreg")
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-add_overall.R:1:1', 'test-style_xxx.R:110:3',
'test-tbl_ae.R:1:1', 'test-tbl_ae_count.R:1:1', 'test-tbl_ae_focus.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inline_text.R:2:3'): inline text works ─────────────────────────
Error in `UseMethod("filter")`: no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-inline_text.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% inline_text(row = "Anaemia", column = stat_5)
5. ├─gtsummary::inline_text(., row = "Anaemia", column = stat_5)
6. └─gtreg::tbl_ae(., id = patient_id, ae = adverse_event, by = grade)
7. └─gtreg:::.construct_summary_table(...)
8. └─gtreg (local) .final_summary_fun(data)
9. └─gtreg:::.build_single_summary_table(...)
10. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Error ('test-modify_header.R:2:3'): modify_header() works ───────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(., tbl = switch(.parent_fun, tbl_strata = map(.data$data,
.tbl_fun, ...), tbl_strata2 = map2(.data$data, .data$header,
.tbl_fun, ...)))`: i In argument: `tbl = switch(...)`.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─... %>% ... at test-modify_header.R:2:3
2. ├─gtreg::tbl_ae(...)
3. │ └─gtreg:::.construct_summary_table(...)
4. │ └─gtsummary::tbl_strata(...)
5. │ └─gtsummary:::tbl_strata_internal(...)
6. │ └─... %>% ...
7. ├─dplyr::mutate(...)
8. ├─dplyr:::mutate.data.frame(...)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─gtsummary:::map(.data$data, .tbl_fun, ...)
15. │ └─base::lapply(.x, .f, ...)
16. │ └─gtreg (local) FUN(X[[i]], ...)
17. │ └─gtreg (local) .final_summary_fun(data = .x)
18. │ └─gtreg:::.build_single_summary_table(...)
19. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
20. └─base::.handleSimpleError(...)
21. └─dplyr (local) h(simpleError(msg, call))
22. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Failure ('test-style_xxx.R:22:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:22:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:38:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:38:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae_count(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:52:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: i In index: 1.
i With name: any_complication.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Class: purrr_error_indexed/rlang_error/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:52:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtreg::tbl_ae_focus(...)
10. │ └─... %>% gtsummary::tbl_merge(tab_spanner = FALSE)
11. ├─gtsummary::tbl_merge(., tab_spanner = FALSE)
12. ├─purrr::imap(...)
13. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
14. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─gtreg (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─gtreg:::.construct_summary_table(...)
20. │ └─gtreg (local) .final_summary_fun(data)
21. │ └─gtreg:::.build_single_summary_table(...)
22. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
23. └─base::.handleSimpleError(...)
24. └─purrr (local) h(simpleError(msg, call))
25. └─cli::cli_abort(...)
26. └─rlang::abort(...)
── Error ('test-style_xxx.R:67:3'): style_xxx works with tbl_ae family ─────────
Error: object 't1' not found
Backtrace:
▆
1. └─testthat::expect_snapshot(as.data.frame(t1)) at test-style_xxx.R:67:3
2. └─rlang::cnd_signal(state$error)
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [24s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gtreg)
Attaching package: 'gtreg'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtreg")
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-add_overall.R:1:1', 'test-style_xxx.R:110:3',
'test-tbl_ae.R:1:1', 'test-tbl_ae_count.R:1:1', 'test-tbl_ae_focus.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inline_text.R:2:3'): inline text works ─────────────────────────
Error in `UseMethod("filter")`: no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-inline_text.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% inline_text(row = "Anaemia", column = stat_5)
5. ├─gtsummary::inline_text(., row = "Anaemia", column = stat_5)
6. └─gtreg::tbl_ae(., id = patient_id, ae = adverse_event, by = grade)
7. └─gtreg:::.construct_summary_table(...)
8. └─gtreg (local) .final_summary_fun(data)
9. └─gtreg:::.build_single_summary_table(...)
10. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Error ('test-modify_header.R:2:3'): modify_header() works ───────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(., tbl = switch(.parent_fun, tbl_strata = map(.data$data,
.tbl_fun, ...), tbl_strata2 = map2(.data$data, .data$header,
.tbl_fun, ...)))`: i In argument: `tbl = switch(...)`.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─... %>% ... at test-modify_header.R:2:3
2. ├─gtreg::tbl_ae(...)
3. │ └─gtreg:::.construct_summary_table(...)
4. │ └─gtsummary::tbl_strata(...)
5. │ └─gtsummary:::tbl_strata_internal(...)
6. │ └─... %>% ...
7. ├─dplyr::mutate(...)
8. ├─dplyr:::mutate.data.frame(...)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─gtsummary:::map(.data$data, .tbl_fun, ...)
15. │ └─base::lapply(.x, .f, ...)
16. │ └─gtreg (local) FUN(X[[i]], ...)
17. │ └─gtreg (local) .final_summary_fun(data = .x)
18. │ └─gtreg:::.build_single_summary_table(...)
19. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
20. └─base::.handleSimpleError(...)
21. └─dplyr (local) h(simpleError(msg, call))
22. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Failure ('test-style_xxx.R:22:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:22:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:38:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:38:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae_count(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:52:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: i In index: 1.
i With name: any_complication.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Class: purrr_error_indexed/rlang_error/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:52:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtreg::tbl_ae_focus(...)
10. │ └─... %>% gtsummary::tbl_merge(tab_spanner = FALSE)
11. ├─gtsummary::tbl_merge(., tab_spanner = FALSE)
12. ├─purrr::imap(...)
13. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
14. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─gtreg (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─gtreg:::.construct_summary_table(...)
20. │ └─gtreg (local) .final_summary_fun(data)
21. │ └─gtreg:::.build_single_summary_table(...)
22. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
23. └─base::.handleSimpleError(...)
24. └─purrr (local) h(simpleError(msg, call))
25. └─cli::cli_abort(...)
26. └─rlang::abort(...)
── Error ('test-style_xxx.R:67:3'): style_xxx works with tbl_ae family ─────────
Error: object 't1' not found
Backtrace:
▆
1. └─testthat::expect_snapshot(as.data.frame(t1)) at test-style_xxx.R:67:3
2. └─rlang::cnd_signal(state$error)
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [24s/34s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gtreg)
Attaching package: 'gtreg'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtreg")
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-add_overall.R:1:1', 'test-style_xxx.R:110:3',
'test-tbl_ae.R:1:1', 'test-tbl_ae_count.R:1:1', 'test-tbl_ae_focus.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inline_text.R:2:3'): inline text works ─────────────────────────
Error in `UseMethod("filter")`: no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-inline_text.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% inline_text(row = "Anaemia", column = stat_5)
5. ├─gtsummary::inline_text(., row = "Anaemia", column = stat_5)
6. └─gtreg::tbl_ae(., id = patient_id, ae = adverse_event, by = grade)
7. └─gtreg:::.construct_summary_table(...)
8. └─gtreg (local) .final_summary_fun(data)
9. └─gtreg:::.build_single_summary_table(...)
10. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Error ('test-modify_header.R:2:3'): modify_header() works ───────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(., tbl = switch(.parent_fun, tbl_strata = map(.data$data,
.tbl_fun, ...), tbl_strata2 = map2(.data$data, .data$header,
.tbl_fun, ...)))`: i In argument: `tbl = switch(...)`.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─... %>% ... at test-modify_header.R:2:3
2. ├─gtreg::tbl_ae(...)
3. │ └─gtreg:::.construct_summary_table(...)
4. │ └─gtsummary::tbl_strata(...)
5. │ └─gtsummary:::tbl_strata_internal(...)
6. │ └─... %>% ...
7. ├─dplyr::mutate(...)
8. ├─dplyr:::mutate.data.frame(...)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─gtsummary:::map(.data$data, .tbl_fun, ...)
15. │ └─base::lapply(.x, .f, ...)
16. │ └─gtreg (local) FUN(X[[i]], ...)
17. │ └─gtreg (local) .final_summary_fun(data = .x)
18. │ └─gtreg:::.build_single_summary_table(...)
19. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
20. └─base::.handleSimpleError(...)
21. └─dplyr (local) h(simpleError(msg, call))
22. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Failure ('test-style_xxx.R:22:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:22:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:38:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:38:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae_count(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:52:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: i In index: 1.
i With name: any_complication.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Class: purrr_error_indexed/rlang_error/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:52:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtreg::tbl_ae_focus(...)
10. │ └─... %>% gtsummary::tbl_merge(tab_spanner = FALSE)
11. ├─gtsummary::tbl_merge(., tab_spanner = FALSE)
12. ├─purrr::imap(...)
13. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
14. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─gtreg (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─gtreg:::.construct_summary_table(...)
20. │ └─gtreg (local) .final_summary_fun(data)
21. │ └─gtreg:::.build_single_summary_table(...)
22. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
23. └─base::.handleSimpleError(...)
24. └─purrr (local) h(simpleError(msg, call))
25. └─cli::cli_abort(...)
26. └─rlang::abort(...)
── Error ('test-style_xxx.R:67:3'): style_xxx works with tbl_ae family ─────────
Error: object 't1' not found
Backtrace:
▆
1. └─testthat::expect_snapshot(as.data.frame(t1)) at test-style_xxx.R:67:3
2. └─rlang::cnd_signal(state$error)
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [18s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(gtreg)
Attaching package: 'gtreg'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtreg")
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-add_overall.R:1:1', 'test-style_xxx.R:110:3',
'test-tbl_ae.R:1:1', 'test-tbl_ae_count.R:1:1', 'test-tbl_ae_focus.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inline_text.R:2:3'): inline text works ─────────────────────────
Error in `UseMethod("filter")`: no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-inline_text.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% inline_text(row = "Anaemia", column = stat_5)
5. ├─gtsummary::inline_text(., row = "Anaemia", column = stat_5)
6. └─gtreg::tbl_ae(., id = patient_id, ae = adverse_event, by = grade)
7. └─gtreg:::.construct_summary_table(...)
8. └─gtreg (local) .final_summary_fun(data)
9. └─gtreg:::.build_single_summary_table(...)
10. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Error ('test-modify_header.R:2:3'): modify_header() works ───────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(., tbl = switch(.parent_fun, tbl_strata = map(.data$data,
.tbl_fun, ...), tbl_strata2 = map2(.data$data, .data$header,
.tbl_fun, ...)))`: i In argument: `tbl = switch(...)`.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─... %>% ... at test-modify_header.R:2:3
2. ├─gtreg::tbl_ae(...)
3. │ └─gtreg:::.construct_summary_table(...)
4. │ └─gtsummary::tbl_strata(...)
5. │ └─gtsummary:::tbl_strata_internal(...)
6. │ └─... %>% ...
7. ├─dplyr::mutate(...)
8. ├─dplyr:::mutate.data.frame(...)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─gtsummary:::map(.data$data, .tbl_fun, ...)
15. │ └─base::lapply(.x, .f, ...)
16. │ └─gtreg (local) FUN(X[[i]], ...)
17. │ └─gtreg (local) .final_summary_fun(data = .x)
18. │ └─gtreg:::.build_single_summary_table(...)
19. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
20. └─base::.handleSimpleError(...)
21. └─dplyr (local) h(simpleError(msg, call))
22. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Failure ('test-style_xxx.R:22:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:22:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:38:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:38:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae_count(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:52:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: i In index: 1.
i With name: any_complication.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Class: purrr_error_indexed/rlang_error/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:52:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtreg::tbl_ae_focus(...)
10. │ └─... %>% gtsummary::tbl_merge(tab_spanner = FALSE)
11. ├─gtsummary::tbl_merge(., tab_spanner = FALSE)
12. ├─purrr::imap(...)
13. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
14. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─gtreg (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─gtreg:::.construct_summary_table(...)
20. │ └─gtreg (local) .final_summary_fun(data)
21. │ └─gtreg:::.build_single_summary_table(...)
22. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
23. └─base::.handleSimpleError(...)
24. └─purrr (local) h(simpleError(msg, call))
25. └─cli::cli_abort(...)
26. └─rlang::abort(...)
── Error ('test-style_xxx.R:67:3'): style_xxx works with tbl_ae family ─────────
Error: object 't1' not found
Backtrace:
▆
1. └─testthat::expect_snapshot(as.data.frame(t1)) at test-style_xxx.R:67:3
2. └─rlang::cnd_signal(state$error)
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [27s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(gtreg)
Attaching package: 'gtreg'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtreg")
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-add_overall.R:1:1', 'test-style_xxx.R:110:3',
'test-tbl_ae.R:1:1', 'test-tbl_ae_count.R:1:1', 'test-tbl_ae_focus.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inline_text.R:2:3'): inline text works ─────────────────────────
Error in `UseMethod("filter")`: no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-inline_text.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% inline_text(row = "Anaemia", column = stat_5)
5. ├─gtsummary::inline_text(., row = "Anaemia", column = stat_5)
6. └─gtreg::tbl_ae(., id = patient_id, ae = adverse_event, by = grade)
7. └─gtreg:::.construct_summary_table(...)
8. └─gtreg (local) .final_summary_fun(data)
9. └─gtreg:::.build_single_summary_table(...)
10. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Error ('test-modify_header.R:2:3'): modify_header() works ───────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(., tbl = switch(.parent_fun, tbl_strata = map(.data$data,
.tbl_fun, ...), tbl_strata2 = map2(.data$data, .data$header,
.tbl_fun, ...)))`: i In argument: `tbl = switch(...)`.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Backtrace:
▆
1. ├─... %>% ... at test-modify_header.R:2:3
2. ├─gtreg::tbl_ae(...)
3. │ └─gtreg:::.construct_summary_table(...)
4. │ └─gtsummary::tbl_strata(...)
5. │ └─gtsummary:::tbl_strata_internal(...)
6. │ └─... %>% ...
7. ├─dplyr::mutate(...)
8. ├─dplyr:::mutate.data.frame(...)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─gtsummary:::map(.data$data, .tbl_fun, ...)
15. │ └─base::lapply(.x, .f, ...)
16. │ └─gtreg (local) FUN(X[[i]], ...)
17. │ └─gtreg (local) .final_summary_fun(data = .x)
18. │ └─gtreg:::.build_single_summary_table(...)
19. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
20. └─base::.handleSimpleError(...)
21. └─dplyr (local) h(simpleError(msg, call))
22. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Failure ('test-style_xxx.R:22:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:22:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:38:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: no applicable method for 'filter' applied to an object of class "NULL"
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:38:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtsummary::modify_header(., all_ae_cols() ~ "**Grade {by}**")
10. └─gtreg::tbl_ae_count(...)
11. └─gtreg:::.construct_summary_table(...)
12. └─gtreg (local) .final_summary_fun(data)
13. └─gtreg:::.build_single_summary_table(...)
14. └─dplyr::filter(tbl$table_styling$footnote, FALSE)
── Failure ('test-style_xxx.R:52:3'): style_xxx works with tbl_ae family ───────
`... <- NULL` threw an unexpected error.
Message: i In index: 1.
i With name: any_complication.
Caused by error in `UseMethod()`:
! no applicable method for 'filter' applied to an object of class "NULL"
Class: purrr_error_indexed/rlang_error/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-style_xxx.R:52:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% modify_spanning_header(all_ae_cols() ~ "**N = xx**")
8. ├─gtsummary::modify_spanning_header(., all_ae_cols() ~ "**N = xx**")
9. ├─gtreg::tbl_ae_focus(...)
10. │ └─... %>% gtsummary::tbl_merge(tab_spanner = FALSE)
11. ├─gtsummary::tbl_merge(., tab_spanner = FALSE)
12. ├─purrr::imap(...)
13. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
14. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─gtreg (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─gtreg:::.construct_summary_table(...)
20. │ └─gtreg (local) .final_summary_fun(data)
21. │ └─gtreg:::.build_single_summary_table(...)
22. │ └─dplyr::filter(tbl$table_styling$footnote, FALSE)
23. └─base::.handleSimpleError(...)
24. └─purrr (local) h(simpleError(msg, call))
25. └─cli::cli_abort(...)
26. └─rlang::abort(...)
── Error ('test-style_xxx.R:67:3'): style_xxx works with tbl_ae family ─────────
Error: object 't1' not found
Backtrace:
▆
1. └─testthat::expect_snapshot(as.data.frame(t1)) at test-style_xxx.R:67:3
2. └─rlang::cnd_signal(state$error)
[ FAIL 6 | WARN 34 | SKIP 5 | PASS 69 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64