CRAN Package Check Results for Package rstanarm

Last updated on 2020-05-25 12:48:11 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.19.3 1308.43 493.88 1802.31 NOTE
r-devel-linux-x86_64-debian-gcc 2.19.3 1044.70 388.13 1432.83 NOTE
r-devel-linux-x86_64-fedora-clang 2.19.3 2502.15 NOTE
r-devel-linux-x86_64-fedora-gcc 2.19.3 2881.79 NOTE
r-devel-windows-ix86+x86_64 2.19.3 2647.00 429.00 3076.00 NOTE --no-examples --no-tests --no-vignettes
r-patched-linux-x86_64 2.19.3 1357.19 502.14 1859.33 NOTE
r-patched-solaris-x86 2.19.3 2134.50 NOTE
r-release-linux-x86_64 2.19.3 1301.51 500.35 1801.86 NOTE
r-release-osx-x86_64 2.19.3 NOTE
r-release-windows-ix86+x86_64 2.19.3 2241.00 434.00 2675.00 NOTE --no-examples --no-tests --no-vignettes
r-oldrel-osx-x86_64 2.19.3 ERROR
r-oldrel-windows-ix86+x86_64 2.19.3 1736.00 384.00 2120.00 NOTE --no-examples --no-tests --no-vignettes

Check Details

Version: 2.19.3
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 2.19.3
Check: installed package size
Result: NOTE
     installed size is 217.6Mb
     sub-directories of 1Mb or more:
     R 1.6Mb
     doc 4.5Mb
     libs 210.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 2.19.3
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘RcppParallel’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 2.19.3
Flags: --no-examples --no-tests --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 24.5Mb
     sub-directories of 1Mb or more:
     R 1.6Mb
     doc 4.4Mb
     libs 17.8Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.19.3
Flags: --no-examples --no-tests --no-vignettes
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.19.3
Check: examples
Result: ERROR
    Running examples in ‘rstanarm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: example_jm
    > ### Title: Example joint longitudinal and time-to-event model
    > ### Aliases: example_jm
    >
    > ### ** Examples
    >
    > set.seed(123)
    > example_jm <-
    + stan_jm(formulaLong = logBili ~ year + (1 | id),
    + dataLong = pbcLong[1:101,],
    + formulaEvent = survival::Surv(futimeYears, death) ~ sex + trt,
    + dataEvent = pbcSurv[1:15,],
    + time_var = "year",
    + # this next line is only to keep the example small in size!
    + chains = 1, seed = 12345, iter = 100, refresh = 0)
    Loading required namespace: data.table
    Fitting a univariate joint model.
    
    Please note the warmup may be much slower than later iterations!
    [1] "Error in sampler$call_sampler(args_list[[i]]) : "
    [2] " empty_nested() must be true before calling recover_memory()"
    error occurred during calling the sampler; sampling not done
    Error in check_stanfit(stanfit) :
     Invalid stanfit object produced please report bug
    Calls: stan_jm -> stan_jm.fit -> check_stanfit
    Execution halted
Flavor: r-oldrel-osx-x86_64