CRAN Package Check Results for Package walker

Last updated on 2019-11-15 12:48:17 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.0 250.58 495.10 745.68 NOTE
r-devel-linux-x86_64-debian-gcc 0.3.0 271.26 302.62 573.88 NOTE
r-devel-linux-x86_64-fedora-clang 0.3.0 1026.34 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3.0 1004.58 NOTE
r-devel-windows-ix86+x86_64 0.3.0 522.00 589.00 1111.00 NOTE
r-patched-linux-x86_64 0.3.0 254.11 464.94 719.05 NOTE
r-patched-solaris-x86 0.3.0 1861.70 NOTE
r-release-linux-x86_64 0.3.0 238.88 472.73 711.61 NOTE
r-release-windows-ix86+x86_64 0.3.0 376.00 745.00 1121.00 NOTE
r-release-osx-x86_64 0.3.0 ERROR
r-oldrel-windows-ix86+x86_64 0.3.0 416.00 681.00 1097.00 NOTE

Check Details

Version: 0.3.0
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3.0
Check: installed package size
Result: NOTE
     installed size is 57.6Mb
     sub-directories of 1Mb or more:
     libs 56.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3.0
Check: top-level files
Result: NOTE
    ‘configure’: /bin/bash is not portable
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.0
Check: examples
Result: ERROR
    Running examples in ‘walker-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plot_predict
    > ### Title: Prediction intervals for walker object
    > ### Aliases: plot_predict
    >
    > ### ** Examples
    >
    > set.seed(1)
    > n <- 60
    > slope <- 0.0001 + cumsum(rnorm(n, 0, sd = 0.01))
    > beta <- numeric(n)
    > beta[1] <- 1
    > for(i in 2:n) beta[i] <- beta[i-1] + slope[i-1]
    > ts.plot(beta)
    > x <- rnorm(n, 1, 0.5)
    > alpha <- 2
    > ts.plot(beta * x)
    >
    > signal <- alpha + beta * x
    > y <- rnorm(n, signal, 0.25)
    > ts.plot(cbind(signal, y), col = 1:2)
    > data_old <- data.frame(y = y[1:(n-10)], x = x[1:(n-10)])
    > rw2_fit <- walker(y ~ 1 +
    + rw2(~ -1 + x,
    + beta_prior = c(0, 10),
    + sigma_prior = c(0, 10),
    + slope_prior = c(0, 10)),
    + sigma_y_prior = c(0, 10),
    + beta_prior = c(0, 10),
    + iter = 400, chains = 1, data = data_old)
    
    SAMPLING FOR MODEL 'walker_lm' NOW (CHAIN 1).
    Chain 1:
    Chain 1: Gradient evaluation took 0.000874 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 8.74 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1:
    Chain 1:
    Chain 1: Iteration: 1 / 400 [ 0%] (Warmup)
    [1] "Error in sampler$call_sampler(args_list[[i]]) : "
    [2] " c++ exception (unknown reason)"
    error occurred during calling the sampler; sampling not done
    >
    > pred <- predict(rw2_fit, newdata = data.frame(x=x[(n-9):n]))
    Stan model 'walker_lm' does not contain samples.
    Stan model 'walker_lm' does not contain samples.
    Error in matrix(0, n_iter, 0) : non-numeric matrix extent
    Calls: predict -> predict.walker_fit -> matrix
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.3.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘walker.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 124-128 (walker.Rmd)
    Error: processing vignette 'walker.Rmd' failed with diagnostics:
    argument of length 0
    --- failed re-building ‘walker.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘walker.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64