CDMConnector 1.6.1
- use BIGINT for subject_id column of cohort tables
CDMConnector 1.6.0
- fix bug in copyCdmTo where attribute tables were not being copied
#231 @catalamarti
- check that overwrite argument works in compute when using temp
tables #222 @ablack3
- added synpuf1k with achilles tables to example datasets #230 @ablack3
CDMConnector 1.5.0
- Get all tests passing on Databricks/Spark using odbc driver
- Emulate temporary tables on Databricks/Spark when compute is called
with temporary = TRUE
- soft deprecate asDate in favor of as.Date
- soft deprecate assertWriteSchema since cdm object are now required
to always have a write schema
- remove support for Capr cohort objects in generate_cohort_set to
pass CRAN checks
CDMConnector 1.4.0
- fix issue on cran server
- new omopgenerics methods
CDMConnector 1.3.1
- Bug fix for collapse cohort
- dbplyr 2.5.0 fixes
CDMConnector 1.3.0
CDMConnector 1.2.1
CDMConnector 1.2.0
- Compatibility with dbplyr v2.4.0
CDMConnector 1.1.4
- Fix recursive edge cases with cdm reference issue.
CDMConnector 1.1.3
- Fix recursive cdm reference issue. Thanks @catalamarti!
CDMConnector 1.1.2
CDMConnector 1.1.1
- add some bigquery support
August 22, 2023
CDMConnector 1.1.0
- add
copy_cdm_to, copyCdmTo
- add
generate_concept_cohort_set,
generateConceptCohortSet
- add more example CDM datasets
- add
record_cohort_attrition,
recordCohortAttrition
- improve database test coverage
- update vignettes
Released Aug 17, 2023
CDMConnector 1.0.0
- remove
write_prefix in cdm_from_con in
favor of using the write_schema argument for prefixing
- remove
cdm_tables argument from
cdm_from_con in favor of cdm_select_tbl
selection function
- add attributes to the cdm object to communicate downstream temp
table preferences
Released June 7, 2023
CDMConnector 0.6.0
- generate Capr cohorts with
generateCohortSet
- add datepart function for extracting year, month, day parts of dates
in dplyr
- fix datediff logic for years so it now returns number of complete
years between two date
- add “write_prefix” attribute to cdm objects to support a namespace
within the write_schema
Released May 5, 2023
CDMConnector 0.5.1
- Add both camelCase and snake_case versions of all functions (@Tsemharb)
- Add cdm object attributes to
cdm_snapshot output
- use
number_records and number_subjects in
cohort counts table
- Minor bug fixes
Released on March 20, 2023
CDMConnector 0.5.0
- Define
generatedCohortSet class
- Add
summarize_quantile for cross database quantile
queries
- Add
GeneratedCohortSet object, constructor, and
attribute accessor functions
- Add vignette on cohort generation
- Add
cdmSubset, cdmSubsetCohort,
cdmSample for subsetting a cdm
- Add
cdmFlatten for transforming a cdm into a single
flat table of observations
- Improve test coverage
- Make Java dependency optional
cdm_schema is now required in cdm_from_con
except for duckdb connections- Remove visit_detail from default cdm tables
- Deprecate
computePermanent
- Improve package website
Substantial contributions by @edward-burn, @catalamarti, @Tsemharb who are now package
co-authors.
Released Mar 8, 2023
CDMConnector 0.4.1
- Add
computeQuery function for creating temp and
persistent tables from dplyr queries
- Download Eunomia from darwin-eu repository as zipped csv files
- Add passing tests for Oracle and Spark
- Add
asDate wrapper that provides correct as.Date dbplyr
translations
- Incorporate code review suggestions from @mvankessel-EMC
Released Jan 21, 2023
CDMConnector 0.3.0
- Add computePermanent and appendPermanent functions
- Add readCohortSet
- Add generateCohortSet
- Extract Eunomia dataset so that it is downloaded separately
Released Nov 29, 2022
CDMConnector 0.2.0
- Add support for OMOP v5.3 and v5.4
- Add datediff and dateadd functions that can be used in
dplyr::mutate()
- Add assert_tables function for checking that a cdm object has
required tables
- Add camelCase versions of several functions
Released Nov 15, 2022
CDMConnector 0.1.0
- Initial release Sept 11, 2022
- Added a
NEWS.md file to track changes to the
package.