MiDA: Microarray Data Analysis

Set of functions designed to simplify transcriptome analysis and identification of marker molecules using microarrays data. The package includes a set of functions that allows performing full pipeline of analysis including data normalization, summarisation, binary classification, FDR (False Discovery Rate) multiple comparison and the definition of potential biological markers.

Version: 0.1.2
Depends: R (≥ 3.5.0)
Imports: caret, gbm, genefilter, graphics, limma, preprocessCore, pROC, stats, SQN
Published: 2019-04-18
Author: Elena Filatova [aut, cre], Nikolai Sakharnov [dtc], Dmitry Knyazev [dtc], Oleg Utkin [dtc], Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod, Russia [fnd]
Maintainer: Elena Filatova <filatova at nniiem.ru>
License: GPL-3
NeedsCompilation: no
CRAN checks: MiDA results

Downloads:

Reference manual: MiDA.pdf
Package source: MiDA_0.1.2.tar.gz
Windows binaries: r-devel: MiDA_0.1.2.zip, r-release: MiDA_0.1.2.zip, r-oldrel: MiDA_0.1.2.zip
OS X binaries: r-release: MiDA_0.1.2.tgz, r-oldrel: MiDA_0.1.2.tgz
Old sources: MiDA archive

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