SDMtune: Species Distribution Model Selection

User-friendly framework that enables the training and the evaluation of species distribution models (SDMs). The package implements functions for data driven variable selection and model tuning and includes numerous utilities to display the results. All the functions used to select variables or to tune model hyperparameters have an interactive real-time chart displayed in the 'RStudio' viewer pane during their execution.

Version: 1.3.1
Depends: R (≥ 4.1.0)
Imports: cli (≥ 3.4.1), dismo (≥ 1.3-9), gbm (≥ 2.1.5), ggplot2 (≥ 3.4.0), jsonlite (≥ 1.6), maxnet (≥ 0.1.4), methods, nnet (≥ 7.3-12), randomForest (≥ 4.6-14), Rcpp (≥ 1.0.1), rlang (≥ 0.4.5), rstudioapi (≥ 0.10), stringr (≥ 1.4.0), terra (≥ 1.6-47), whisker (≥ 0.3-2)
LinkingTo: Rcpp
Suggests: covr, htmltools (≥ 0.3.6), kableExtra (≥ 1.1.0), knitr (≥ 1.23), maps (≥ 3.3.0), pkgdown (≥ 2.0.7), plotROC (≥ 2.2.1), rasterVis (≥ 0.50), reshape2 (≥ 1.4.3), rJava (≥ 0.9-11), rmarkdown (≥ 2.16), scales (≥ 1.0.0), testthat (≥ 3.1.7), withr (≥ 2.5.0), zeallot (≥ 0.1.0)
Published: 2023-07-03
Author: Sergio Vignali ORCID iD [aut, cre], Arnaud Barras ORCID iD [aut], Veronika Braunisch ORCID iD [aut], Conservation Biology - University of Bern [fnd]
Maintainer: Sergio Vignali <sergio.vignali at unibe.ch>
BugReports: https://github.com/ConsBiol-unibern/SDMtune/issues
License: GPL-3
URL: https://consbiol-unibern.github.io/SDMtune/
NeedsCompilation: yes
SystemRequirements: Java (>= 8)
Language: en-US
Citation: SDMtune citation info
Materials: README NEWS
CRAN checks: SDMtune results

Documentation:

Reference manual: SDMtune.pdf
Vignettes: SDMtune - basic use
SDMtune - hyperparameter tuning
SDMtune - presence absence models
SDMtune - variable selection

Downloads:

Package source: SDMtune_1.3.1.tar.gz
Windows binaries: r-devel: SDMtune_1.3.1.zip, r-release: SDMtune_1.3.1.zip, r-oldrel: SDMtune_1.3.1.zip
macOS binaries: r-release (arm64): SDMtune_1.3.1.tgz, r-oldrel (arm64): SDMtune_1.3.1.tgz, r-release (x86_64): SDMtune_1.3.1.tgz
Old sources: SDMtune archive

Linking:

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