sensiPhy: Sensitivity Analysis for Comparative Methods

An implementation of sensitivity analysis for phylogenetic comparative methods. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PCM: (i) Species Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty (different topologies and/or branch lengths). (iii) Data uncertainty (intraspecific variation and measurement error).

Version: 0.8.0
Depends: R (≥ 3.1.0), ape (≥ 3.3), phylolm (≥ 2.4), ggplot2 (≥ 2.1.0)
Imports: caper (≥ 0.5.2), phytools (≥ 0.6), geiger (≥ 2.0)
Suggests: knitr, rmarkdown
Published: 2017-12-15
Author: Gustavo Paterno [cre, aut], Gijsbert Werner [aut], Caterina Penone [aut], Pablo Martinez [ctb]
Maintainer: Gustavo Paterno <paternogbc at gmail.com>
BugReports: https://github.com/paternogbc/sensiPhy/issues
License: GPL-2
URL: https://github.com/paternogbc/sensiPhy
NeedsCompilation: no
Materials: NEWS
CRAN checks: sensiPhy results

Downloads:

Reference manual: sensiPhy.pdf
Vignettes: sensiPhy: R-package for sensitivity analysis in phylogenetic comparative methods
Package source: sensiPhy_0.8.0.tar.gz
Windows binaries: r-devel: sensiPhy_0.8.0.zip, r-release: sensiPhy_0.8.0.zip, r-oldrel: sensiPhy_0.7.0.zip
OS X El Capitan binaries: r-release: sensiPhy_0.8.0.tgz
OS X Mavericks binaries: r-oldrel: sensiPhy_0.8.0.tgz
Old sources: sensiPhy archive

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