tidyMicro: A Pipeline for Microbiome Analysis and Visualization

A reliable alternative to popular microbiome analysis R packages. We provide standard tools as well as novel extensions on standard analyses to improve interpretability and the analyst’s ability to communicate results, all while maintaining object malleability to encourage open source collaboration.

Version: 1.47
Depends: R (≥ 3.5.0), tidyverse (≥ 1.3.0)
Imports: magrittr (≥ 1.5.0), ggrepel (≥ 0.8.1), MASS (≥ 7.3-51.4), VGAM (≥ 1.1-2), rlang (≥ 0.3.4), car (≥ 3.0-3), lme4 (≥ 1.1-21), vegan (≥ 2.5-5), Matrix (≥ 1.2-17), cowplot (≥ 0.9.4), lsr (≥ 0.5), shapes (≥ 1.2.4), Evomorph (≥ 0.9), ThreeWay (≥ 1.1.3), factoextra (≥ 1.0.5), ade4 (≥ 1.7-13), scatterplot3d (≥ 0.3-41), gridExtra (≥ 2.3), plotly (≥ 4.9.0), png (≥ 0.1-7), latex2exp (≥ 0.4.0), broom (≥ 0.5.0), plyr (≥ 1.8.0), dplyr (≥ 0.8.0), ggplot2 (≥ 3.2.0), purrr (≥ 0.3.0), stringr (≥ 1.4.0), tibble (≥ 2.1.0), tidyr (≥ 1.0.0), scales (≥ 1.1.0)
Suggests: knitr, markdown, roxygen2, rmarkdown, testthat
Published: 2020-09-13
Author: Charlie Carpenter [aut, cre], Dan Frank [aut], Kayla Williamson [aut], Rachel Johnson [ctb]
Maintainer: Charlie Carpenter <charles.carpenter at cuanschutz.edu>
BugReports: https://github.com/CharlieCarpenter/tidyMicro
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: tidyMicro results

Downloads:

Reference manual: tidyMicro.pdf
Vignettes: tidyMicro Vignette
Package source: tidyMicro_1.47.tar.gz
Windows binaries: r-devel: tidyMicro_1.47.zip, r-release: tidyMicro_1.43.zip, r-oldrel: tidyMicro_1.47.zip
macOS binaries: r-release: tidyMicro_1.47.tgz, r-oldrel: tidyMicro_1.47.tgz
Old sources: tidyMicro archive

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