| calc_network_R |
Calculate the reproduction number (R) for a (heterogeneous) network |
| constants |
Constants used in 'superspreading' |
| dpoislnorm |
Density of the poisson-lognormal compound distribution |
| dpoisweibull |
Density of the poisson-Weibull compound distribution |
| FINITE_INF |
Constants used in 'superspreading' |
| ic_tbl |
Helper function to create a model comparison table |
| NSIM |
Constants used in 'superspreading' |
| ppoislnorm |
Cumulative distribution function of the poisson-lognormal compound distribution |
| ppoisweibull |
Cumulative distribution function of the poisson-Weibull compound distribution |
| probability_contain |
Probability that an outbreak will be contained |
| probability_epidemic |
Calculate the probability a disease will cause an outbreak based on R, k and initial cases |
| probability_extinct |
Calculate the probability a branching process will go extinct based on R, k and initial cases |
| proportion_cluster_size |
Estimate what proportion of new cases originated within a transmission event of a given size |
| proportion_transmission |
Estimate what proportion of cases cause a certain proportion of transmission |
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