## ----include = FALSE----------------------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

## ----eval=FALSE---------------------------------------------------------------
# 
# maximum_quantum(
#                     file = "C:\\Bioprojects\\BreastCancer\\Proteomics\\MaxQuant\\ProteinGroups.txt",
#                     group_names = c("Control", "Treatment", "Compound"),
#                     samples_per_group = c(10, 12, 9),
#                     imputation = FALSE,
#                     global_filtering = TRUE,
#                     independent = TRUE,
#                     filtering_value = 50,
#                     normalization = FALSE,
#                     parametric= FALSE,
#                     significance = "p")

