Last updated on 2024-11-12 15:49:51 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.2 | 14.55 | 147.66 | 162.21 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.2 | 9.67 | 86.58 | 96.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.2 | 280.57 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.2 | 272.93 | OK | |||
| r-devel-windows-x86_64 | 1.3.2 | 17.00 | 415.00 | 432.00 | OK | |
| r-patched-linux-x86_64 | 1.3.2 | 14.11 | 139.86 | 153.97 | NOTE | |
| r-release-linux-x86_64 | 1.3.2 | 12.47 | 139.21 | 151.68 | NOTE | |
| r-release-macos-arm64 | 1.3.2 | 286.00 | OK | |||
| r-release-macos-x86_64 | 1.3.2 | 430.00 | OK | |||
| r-release-windows-x86_64 | 1.3.2 | 16.00 | 398.00 | 414.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.2 | 304.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.3.2 | 435.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.3.2 | 23.00 | 451.00 | 474.00 | OK |
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘ecocomDP-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_sites
> ### Title: Plot sites on US map
> ### Aliases: plot_sites
>
> ### ** Examples
>
> ## Not run:
> ##D library(dplyr)
> ##D # Read a dataset of interest
> ##D dataset <- read_data("edi.193.5")
> ##D
> ##D # Plot the dataset
> ##D plot_sites(dataset)
> ##D
> ##D # Flatten dataset then plot
> ##D dataset %>%
> ##D flatten_data() %>%
> ##D plot_sites()
> ##D
> ##D # Download a NEON dataset
> ##D dataset2 <- read_data(
> ##D id = "neon.ecocomdp.20120.001.001",
> ##D site= c('COMO','LECO'),
> ##D startdate = "2017-06",
> ##D enddate = "2021-03",
> ##D token = Sys.getenv("NEON_TOKEN"), # option to use a NEON token
> ##D check.size = FALSE)
> ##D
> ##D # Combine the two datasets and plot. This requires the datasets be first
> ##D # flattened and then stacked.
> ##D flattened_data1 <- dataset %>% flatten_data()
> ##D flattened_data2 <- dataset2 %>% flatten_data()
> ##D stacked_data <- bind_rows(flattened_data1,flattened_data2)
> ##D plot_sites(stacked_data)
> ## End(Not run)
>
> # Plot the example dataset
> plot_sites(ants_L1)
Error: Packages ggrepel, usmap, maps, sf are required for running plot_sites(). Packages maps are not installed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘convert.Rmd’ using rmarkdown
--- finished re-building ‘convert.Rmd’
--- re-building ‘create.Rmd’ using rmarkdown
--- finished re-building ‘create.Rmd’
--- re-building ‘model_overview.Rmd’ using rmarkdown
--- finished re-building ‘model_overview.Rmd’
--- re-building ‘shared_practices_create.Rmd’ using rmarkdown
--- finished re-building ‘shared_practices_create.Rmd’
--- re-building ‘use.Rmd’ using rmarkdown
Quitting from lines 226-250 [unnamed-chunk-14] (use.Rmd)
Error: processing vignette 'use.Rmd' failed with diagnostics:
Packages ggrepel, usmap, maps, sf are required for running plot_sites(). Packages maps are not installed.
--- failed re-building ‘use.Rmd’
SUMMARY: processing the following file failed:
‘use.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘taxize’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64