CRAN Package Check Results for Maintainer ‘Kenneth Hoehn <kenneth.b.hoehn at dartmouth.edu>’

Last updated on 2025-09-29 16:50:24 CEST.

Package	ERROR	NOTE	OK
dowser	4	1	8

Package dowser

Current CRAN status: ERROR: 4, NOTE: 1, OK: 8

Version: 2.3
Check: examples
Result: ERROR Running examples in ‘dowser-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: maskCodons > ### Title: 'maskCodons' Masks codons split by insertions > ### Aliases: maskCodons > > ### ** Examples > > s = "ATCATCATC..." > q = "ATCTTTATCATC" > print(maskCodons(1,q,s,TRUE)) Error in .call_fun_in_pwalign("pairwiseAlignment", ...) : pairwiseAlignment() has moved from Biostrings to the pwalign package, and is formally defunct in Biostrings >= 2.77.1. Please call pwalign::pairwiseAlignment() to get rid of this error. Calls: print ... maskCodons -> <Anonymous> -> .call_fun_in_pwalign -> .Defunct Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.3
Check: examples
Result: ERROR Running examples in ‘dowser-Ex.R’ failed The error most likely occurred in: > ### Name: maskCodons > ### Title: 'maskCodons' Masks codons split by insertions > ### Aliases: maskCodons > > ### ** Examples > > s = "ATCATCATC..." > q = "ATCTTTATCATC" > print(maskCodons(1,q,s,TRUE)) Error in .call_fun_in_pwalign("pairwiseAlignment", ...) : pairwiseAlignment() has moved from Biostrings to the pwalign package, and is formally defunct in Biostrings >= 2.77.1. Please call pwalign::pairwiseAlignment() to get rid of this error. Calls: print ... maskCodons -> <Anonymous> -> .call_fun_in_pwalign -> .Defunct Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘pwalign’ Flavor: r-oldrel-macos-x86_64