Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
| Version: |
2.8 |
| Depends: |
ape, nloptr, GenSA |
| Imports: |
expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools |
| Suggests: |
testthat, knitr, rmarkdown |
| Published: |
2022-06-13 |
| DOI: |
10.32614/CRAN.package.corHMM |
| Author: |
Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut],
Jeffrey Oliver [aut],
James Boyko [aut] |
| Maintainer: |
Jeremy Beaulieu <jmbeauli at uark.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| CRAN checks: |
corHMM results |