org.biojava.bio.seq.io.agave
Class Embl2AgaveAnnotFilter
java.lang.Object
org.biojava.bio.seq.io.agave.SimpleAnnotFilter
org.biojava.bio.seq.io.agave.Embl2AgaveAnnotFilter
- All Implemented Interfaces:
- AGAVEAnnotFilter
public class Embl2AgaveAnnotFilter
- extends SimpleAnnotFilter
Map EMBL data into AGAVE format
- Author:
- Hanning Ni Doubletwist Inc
Methods inherited from class org.biojava.bio.seq.io.agave.SimpleAnnotFilter |
getAlignLength, getAlignUnits, getAltIds, getChromNum, getChromosome, getClassifyId, getClassifySystem, getClassifyType, getCloneId, getCloneLibrary, getConfidence, getCreateDate, getEcNumber, getElementId, getElementIds, getExonIds, getFeatureType, getGroupOrder, getIdAlias, getLabel, getMapLocation, getMapPosition, getMatchAlign, getMatchDesc, getMatchRegion, getProperty, getQueryRegion, getRelatedAnnot, getResultType, getSequenceId, getTaxonId, getUpdateDate, getXrefs |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
EMBL_AGAVE_ANNOT_FILTER_FACTORY
public static final AGAVEAnnotFilterFactory EMBL_AGAVE_ANNOT_FILTER_FACTORY
getAccession
public String getAccession(Annotation annot)
- Specified by:
getAccession
in interface AGAVEAnnotFilter
- Overrides:
getAccession
in class SimpleAnnotFilter
getKeyword
public String getKeyword(Annotation annot)
- Specified by:
getKeyword
in interface AGAVEAnnotFilter
- Overrides:
getKeyword
in class SimpleAnnotFilter
getOrganism
public String getOrganism(Annotation annot)
- Specified by:
getOrganism
in interface AGAVEAnnotFilter
- Overrides:
getOrganism
in class SimpleAnnotFilter
getDescription
public String getDescription(Annotation annot)
- Specified by:
getDescription
in interface AGAVEAnnotFilter
- Overrides:
getDescription
in class SimpleAnnotFilter
getNote
public String getNote(Annotation annot)
- Specified by:
getNote
in interface AGAVEAnnotFilter
- Overrides:
getNote
in class SimpleAnnotFilter
getVersion
public String getVersion(Annotation annot)
- Specified by:
getVersion
in interface AGAVEAnnotFilter
- Overrides:
getVersion
in class SimpleAnnotFilter
getOS
public String getOS(Annotation annot)
- Specified by:
getOS
in interface AGAVEAnnotFilter
- Overrides:
getOS
in class SimpleAnnotFilter
getMolType
public String getMolType(Annotation annot)
- Specified by:
getMolType
in interface AGAVEAnnotFilter
- Overrides:
getMolType
in class SimpleAnnotFilter
getDbId
public AGAVEDbId getDbId(Annotation annot)
- Specified by:
getDbId
in interface AGAVEAnnotFilter
- Overrides:
getDbId
in class SimpleAnnotFilter