org.biojava.bio.program.xff
Class XFFTools
java.lang.Object
org.biojava.bio.program.xff.XFFTools
public class XFFTools
- extends Object
Common functionality for manipulating XFF.
- Author:
- Matthew Pocock
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
XFF_NS
public static final String XFF_NS
- See Also:
- Constant Field Values
XFF_BIOJAVA_NS
public static final String XFF_BIOJAVA_NS
- See Also:
- Constant Field Values
XFFTools
public XFFTools()
annotateXFF
public static void annotateXFF(File xffFile,
Sequence sequence)
throws IOException,
SAXException,
BioException
- Throws:
IOException
SAXException
BioException
annotateXFF
public static void annotateXFF(File xffFile,
Sequence sequence,
Annotation ann)
throws IOException,
SAXException,
BioException
- Throws:
IOException
SAXException
BioException
readXFF
public static Sequence readXFF(File xffFile,
String seqID,
FiniteAlphabet alpha)
throws IOException,
SAXException,
BioException
- Throws:
IOException
SAXException
BioException
readXFF
public static Sequence readXFF(File xffFile,
String seqID)
throws IOException,
SAXException,
BioException
- Throws:
IOException
SAXException
BioException
writeXFF
public static void writeXFF(File xffFile,
FeatureHolder features)
throws IOException
- Throws:
IOException
writeXFF
public static void writeXFF(PrintWriter xffPR,
FeatureHolder features)
throws IOException
- Throws:
IOException