Uses of Interface
org.biojava.bio.seq.OptimizableFilter

Packages that use OptimizableFilter
org.biojava.bio.gui.sequence Graphical displays of biological sequences and associated annotations. 
org.biojava.bio.seq Classes and interfaces for defining biological sequences and informatics objects. 
 

Uses of OptimizableFilter in org.biojava.bio.gui.sequence
 

Methods in org.biojava.bio.gui.sequence with parameters of type OptimizableFilter
 void AbstractBeadRenderer.removeDelegateRenderer(OptimizableFilter filter)
          removeDelegateRenderer removes any association of the given OptimizableFilter with a BeadFeatureRenderer.
 void RectangularImapRenderer.setDelegateRenderer(OptimizableFilter filter, BeadFeatureRenderer renderer)
          setDelegateRenderer for the specified filter.
 void BeadFeatureRenderer.setDelegateRenderer(OptimizableFilter filter, BeadFeatureRenderer renderer)
          setDelegateRenderer associates an OptimizableFilter with a BeadFeatureRenderer.
 void AbstractBeadRenderer.setDelegateRenderer(OptimizableFilter filter, BeadFeatureRenderer renderer)
          setDelegateRenderer associates an OptimizableFilter with a BeadFeatureRenderer.
 

Uses of OptimizableFilter in org.biojava.bio.seq
 

Classes in org.biojava.bio.seq that implement OptimizableFilter
static class FeatureFilter.AnnotationContains
          Retrieve features that contain a given annotation, and that the set of values contains the value given.
static class FeatureFilter.ByAncestor
          Filter by applying a nested FeatureFilter to all ancestor features.
static class FeatureFilter.ByAnnotation
          Retrieve features that contain a given annotation with a given value.
static class FeatureFilter.ByAnnotationType
          A filter that returns all features that have an annotation bundle that is of a given annotation type.
static class FeatureFilter.ByChild
          Filter by applying a nested FeatureFilter to the child features.
static class FeatureFilter.ByClass
          Filter which accepts only those filters which are an instance of a specific Java class
static class FeatureFilter.ByComponentName
          Accepts features which are ComponentFeatures and have a componentSequenceName property of the specified value.
static class FeatureFilter.ByDescendant
          Filter by applying a nested FeatureFilter to all descendant features.
static class FeatureFilter.ByFeature
          Accept only features which are equal to the specified feature
static class FeatureFilter.ByPairwiseScore
          ByPairwiseScore is used to filter SimilarityPairFeatures by their score.
static class FeatureFilter.ByParent
          Filter by applying a nested FeatureFilter to the parent feature.
static class FeatureFilter.BySequenceName
          Accept features that reside on a sequence with a particular name.
static class FeatureFilter.BySource
          Construct one of these to filter features by source.
static class FeatureFilter.ByType
          Construct one of these to filter features by type.
static class FeatureFilter.ContainedByLocation
          A filter that returns all features contained within a location.
static class FeatureFilter.FrameFilter
          Accept features with a given reading frame.
static class FeatureFilter.HasAnnotation
          Retrieve features that contain a given annotation with any value.
static class FeatureFilter.OnlyChildren
          Accepts features where all immediate children meet the supplied filter.
static class FeatureFilter.OnlyDescendants
          Accepts features where all descendants meet the supplied filter.
static class FeatureFilter.OverlapsLocation
          A filter that returns all features overlapping a location.
static class FeatureFilter.ShadowContainedByLocation
          A filter that accepts all features whose shadow is contained by a specified Location.
static class FeatureFilter.ShadowOverlapsLocation
          A filter that accepts all features whose shadow overlaps a specified Location.
static class FeatureFilter.StrandFilter
          Accept features with a given strandedness.