org.biojavax.bio.seq.io
Class SimpleRichSequenceBuilderFactory
java.lang.Object
org.biojavax.bio.seq.io.SimpleRichSequenceBuilderFactory
- All Implemented Interfaces:
- SequenceBuilderFactory, RichSequenceBuilderFactory
public class SimpleRichSequenceBuilderFactory
- extends Object
- implements RichSequenceBuilderFactory
Generates RichSequenceBuilder objects.
- Since:
- 1.5
- Author:
- Mark Schreiber, Richard Holland
- See Also:
RichSequenceBuilder
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
SimpleRichSequenceBuilderFactory
public SimpleRichSequenceBuilderFactory()
- Creates a new instance of SimpleRichSequenceBuilderFactory
SimpleRichSequenceBuilderFactory
public SimpleRichSequenceBuilderFactory(SymbolListFactory fact)
- Creates a new instance of SimpleRichSequenceBuilderFactory
- Parameters:
fact
- the factory to use when building the SymbolList
.
SimpleRichSequenceBuilderFactory
public SimpleRichSequenceBuilderFactory(SymbolListFactory fact,
int threshold)
- Creates a new instance of SimpleRichSequenceBuilderFactory that uses
a specified factory for
SymbolLists
longer than a specified
length. Before that a SimpleSymbolListFacotry
is used.
- Parameters:
fact
- the factory to use when building the SymbolList
.threshold
- the threshold to exceed before using this factory
makeSequenceBuilder
public SequenceBuilder makeSequenceBuilder()
-
- Specified by:
makeSequenceBuilder
in interface SequenceBuilderFactory