Last Modified
2013-07-14 11:53:07 +0000
Requires
  • stringio
  • bio/db/fasta
  • bio/io/flatfile
  • bio/alignment
  • bio/appl/mafft

Description

bio/appl/mafft/report.rb - MAFFT report class

Copyright

Copyright (C) 2003, 2007 Naohisa Goto <ng@bioruby.org>

License

The Ruby License

$Id: report.rb,v 1.13 2007/07/16 12:21:39 ngoto Exp $

MAFFT result parser class. MAFFT is a very fast multiple sequence alignment software.

Since a result of MAFFT is simply a multiple-fasta format, the significance of this class is to keep standard form and interface between Bio::ClustalW::Report.

Bio::Alignment::MultiFastaFormat is a generic data class for fasta-formatted multiple sequence alignment data. Bio::MAFFT::Report inherits Bio::Alignment::MultiFastaFormat.

References