org.biojavax.bio.seq.io
Class EMBLxmlFormat.Terms

java.lang.Object
  extended by org.biojavax.bio.seq.RichSequence.Terms
      extended by org.biojavax.bio.seq.io.EMBLxmlFormat.Terms
Enclosing class:
EMBLxmlFormat

public static class EMBLxmlFormat.Terms
extends RichSequence.Terms

Implements some EMBLxml-specific terms.


Field Summary
 
Fields inherited from class org.biojavax.bio.seq.RichSequence.Terms
DOI_KEY, MEDLINE_KEY, PLASMID_KEY, PUBMED_KEY, SPECIES_KEY, STRAIN_KEY, TISSUE_KEY, TRANSPOSON_KEY
 
Constructor Summary
EMBLxmlFormat.Terms()
           
 
Method Summary
static ComparableTerm getDataClassTerm()
          Getter for the Ensembl-specific 'dataClass' term
static ComparableTerm getEMBLxmlTerm()
          Getter for the EMBLxml term
static ComparableTerm getProjectAccessionTerm()
          Getter for the ProjectAccession term
static ComparableTerm getStatusDateTerm()
          Getter for the StatusDate term
static ComparableTerm getStatusTerm()
          Getter for the Status term
static ComparableTerm getSubmitterAccessionTerm()
          Getter for the SubmitterAccession term
static ComparableTerm getSubmitterVersionTerm()
          Getter for the SubmitterVersion term
static ComparableTerm getSubmitterWgsVersionTerm()
          Getter for the SubmitterWgsVersion term
 
Methods inherited from class org.biojavax.bio.seq.RichSequence.Terms
getAdditionalAccessionTerm, getCopyrightTerm, getDateAnnotatedTerm, getDateCreatedTerm, getDateUpdatedTerm, getFeatureDescTerm, getFTIdTerm, getGeneNameTerm, getGeneSynonymTerm, getKeywordTerm, getMolTypeTerm, getOrderedLocusNameTerm, getORFNameTerm, getOrganelleTerm, getPlasmidTerm, getRelAnnotatedTerm, getRelCreatedTerm, getRelUpdatedTerm, getSpeciesTerm, getStrainTerm, getStrandedTerm, getTissueTerm, getTransposonTerm
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

EMBLxmlFormat.Terms

public EMBLxmlFormat.Terms()
Method Detail

getSubmitterAccessionTerm

public static ComparableTerm getSubmitterAccessionTerm()
Getter for the SubmitterAccession term

Returns:
The SubmitterAccession Term

getSubmitterVersionTerm

public static ComparableTerm getSubmitterVersionTerm()
Getter for the SubmitterVersion term

Returns:
The SubmitterVersion Term

getSubmitterWgsVersionTerm

public static ComparableTerm getSubmitterWgsVersionTerm()
Getter for the SubmitterWgsVersion term

Returns:
The SubmitterWgsVersion Term

getStatusTerm

public static ComparableTerm getStatusTerm()
Getter for the Status term

Returns:
The Status Term

getStatusDateTerm

public static ComparableTerm getStatusDateTerm()
Getter for the StatusDate term

Returns:
The StatusDate Term

getProjectAccessionTerm

public static ComparableTerm getProjectAccessionTerm()
Getter for the ProjectAccession term

Returns:
The ProjectAccession Term

getEMBLxmlTerm

public static ComparableTerm getEMBLxmlTerm()
Getter for the EMBLxml term

Returns:
The EMBLxml Term

getDataClassTerm

public static ComparableTerm getDataClassTerm()
Getter for the Ensembl-specific 'dataClass' term

Returns:
The data class Term