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java.lang.Objectorg.biojava.bio.dp.onehead.SmallCursor
public class SmallCursor
Constant-memory implementation of single-head DP cursor.
Constructor Summary | |
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SmallCursor(State[] states,
SymbolList symList,
Iterator symIterator)
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Method Summary | |
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void |
advance()
Advance. |
boolean |
canAdvance()
Can we advance? |
double[] |
currentCol()
The current column of the matrix. |
Symbol |
currentRes()
The current symbol. |
double[] |
lastCol()
The previous column. |
Symbol |
lastRes()
The previous symbol. |
int |
length()
The length of the sequence. |
SymbolList |
symList()
The symbol list being looped over. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public SmallCursor(State[] states, SymbolList symList, Iterator symIterator)
Method Detail |
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public SymbolList symList()
DPCursor
public int length()
DPCursor
The length of the sequence.
The matrix may allocate length+1 columns.
public double[] currentCol()
DPCursor
public double[] lastCol()
DPCursor
public void advance()
DPCursor
advance
in interface DPCursor
public Symbol currentRes()
DPCursor
currentRes
in interface DPCursor
public Symbol lastRes()
DPCursor
lastRes
in interface DPCursor
public boolean canAdvance()
DPCursor
canAdvance
in interface DPCursor
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