gff
Class SwissprotToGffFasta

java.lang.Object
  extended by gff.SwissprotToGffFasta

public class SwissprotToGffFasta
extends Object

Converts a Swissprot file into a fasta file for the sequence and a GFF file for the features.

This program demonstrates how to read in a Swissprot file, how to write a fasta file and how to write GFF.

Use:
java SwissprotToGffFasta swissprotFile fastaOut gffOut

Based heavily off of EmblToGffFasta by Matthew Pocock. It was pretty much a global replace of 'embl' with 'Swissprot'.

Author:
Greg Cox

Constructor Summary
SwissprotToGffFasta()
           
 
Method Summary
static void main(String[] args)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SwissprotToGffFasta

public SwissprotToGffFasta()
Method Detail

main

public static void main(String[] args)
                 throws Exception
Throws:
Exception