ssbind
Class CountHits

java.lang.Object
  extended by org.biojava.bio.search.SearchContentAdapter
      extended by ssbind.CountHits
All Implemented Interfaces:
org.biojava.bio.search.SearchContentHandler

public class CountHits
extends org.biojava.bio.search.SearchContentAdapter

Prints out a count of the total number of hits in a report.

Example

 java ProcessBlastReport blast.out ssbind.CountHits
 

Author:
Matthew Pocock, Rahul Karnik

Constructor Summary
CountHits()
           
 
Method Summary
 void endSearch()
           
 void startHit()
           
 void startSearch()
           
 
Methods inherited from class org.biojava.bio.search.SearchContentAdapter
addHitProperty, addSearchProperty, addSubHitProperty, endHeader, endHit, endSubHit, getMoreSearches, setDatabaseID, setMoreSearches, setQueryID, startHeader, startSubHit
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

CountHits

public CountHits()
Method Detail

startSearch

public void startSearch()
Specified by:
startSearch in interface org.biojava.bio.search.SearchContentHandler
Overrides:
startSearch in class org.biojava.bio.search.SearchContentAdapter

endSearch

public void endSearch()
Specified by:
endSearch in interface org.biojava.bio.search.SearchContentHandler
Overrides:
endSearch in class org.biojava.bio.search.SearchContentAdapter

startHit

public void startHit()
Specified by:
startHit in interface org.biojava.bio.search.SearchContentHandler
Overrides:
startHit in class org.biojava.bio.search.SearchContentAdapter