org.biojava.bio.program.das.dasalignment
Class DASAlignmentXMLResponseParser

java.lang.Object
  extended by org.xml.sax.helpers.DefaultHandler
      extended by org.biojava.bio.program.das.dasalignment.DASAlignmentXMLResponseParser
All Implemented Interfaces:
ContentHandler, DTDHandler, EntityResolver, ErrorHandler

public class DASAlignmentXMLResponseParser
extends DefaultHandler

A class to Parse the XML response of a DAS Alignment service. returns an Alignment object.

Since:
1.4
Author:
Andreas Prlic

Constructor Summary
DASAlignmentXMLResponseParser()
           
 
Method Summary
 void characters(char[] ch, int start, int length)
           
 void endDocument()
           
 void endElement(String uri, String name, String qName)
           
 Alignment getAlignment(int position)
          Returns Alignment at position ...
 Alignment[] getAlignments()
          Returns the alignments.
 void startDocument()
           
 void startElement(String uri, String name, String qName, Attributes atts)
           
 
Methods inherited from class org.xml.sax.helpers.DefaultHandler
endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startPrefixMapping, unparsedEntityDecl, warning
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DASAlignmentXMLResponseParser

public DASAlignmentXMLResponseParser()
Method Detail

getAlignments

public Alignment[] getAlignments()
Returns the alignments.

Returns:
an array of Alignment objects

getAlignment

public Alignment getAlignment(int position)
Returns Alignment at position ...

Parameters:
position - an int
Returns:
an Alignment object

startElement

public void startElement(String uri,
                         String name,
                         String qName,
                         Attributes atts)
Specified by:
startElement in interface ContentHandler
Overrides:
startElement in class DefaultHandler

endElement

public void endElement(String uri,
                       String name,
                       String qName)
Specified by:
endElement in interface ContentHandler
Overrides:
endElement in class DefaultHandler

startDocument

public void startDocument()
Specified by:
startDocument in interface ContentHandler
Overrides:
startDocument in class DefaultHandler

endDocument

public void endDocument()
Specified by:
endDocument in interface ContentHandler
Overrides:
endDocument in class DefaultHandler

characters

public void characters(char[] ch,
                       int start,
                       int length)
Specified by:
characters in interface ContentHandler
Overrides:
characters in class DefaultHandler