# File lib/bio/appl/blast/report.rb, line 297 def bit_score; @hsps.first.bit_score; end
Iterates on each Hsp object.
# File lib/bio/appl/blast/report.rb, line 274 def each @hsps.each do |x| yield x end end
Shortcut methods for the best Hsp, some are also compatible with Bio::Fasta::Report::Hit class.
# File lib/bio/appl/blast/report.rb, line 296 def evalue; @hsps.first.evalue; end
# File lib/bio/appl/blast/report.rb, line 298 def identity; @hsps.first.identity; end
# File lib/bio/appl/blast/report.rb, line 310 def lap_at [ query_start, query_end, target_start, target_end ] end
# File lib/bio/appl/blast/report.rb, line 304 def midline; @hsps.first.midline; end
# File lib/bio/appl/blast/report.rb, line 300 def overlap; @hsps.first.align_len; end
# File lib/bio/appl/blast/report.rb, line 299 def percent_identity; @hsps.first.percent_identity; end
# File lib/bio/appl/blast/report.rb, line 307 def query_end; @hsps.first.query_to; end
# File lib/bio/appl/blast/report.rb, line 302 def query_seq; @hsps.first.qseq; end
# File lib/bio/appl/blast/report.rb, line 306 def query_start; @hsps.first.query_from; end
# File lib/bio/appl/blast/report.rb, line 309 def target_end; @hsps.first.hit_to; end
Generated with the Darkfish Rdoc Generator 2.