Module Bio::PDB::ChainFinder
In: lib/bio/db/pdb/utils.rb

methods to access chains

XXX#each_model must be defined.

Bio::PDB::ChainFinder is included by Bio::PDB::PDB and Bio::PDB::Model.

Methods

Public Instance methods

returns all chains

[Source]

     # File lib/bio/db/pdb/utils.rb, line 272
272:     def chains
273:       array = []
274:       self.each_model { |model| array.concat(model.chains) }
275:       return array
276:     end

iterates over each chain

[Source]

     # File lib/bio/db/pdb/utils.rb, line 267
267:     def each_chain(&x) #:yields: chain
268:       self.each_model { |model| model.each(&x) }
269:     end

returns an array containing all chains for which given block is not false (similar to Enumerable#find_all).

[Source]

     # File lib/bio/db/pdb/utils.rb, line 258
258:     def find_chain
259:       array = []
260:       self.each_chain do |chain|
261:         array.push(chain) if yield(chain)
262:       end
263:       return array
264:     end

[Validate]