cutgextract

 

Function

Extract data from CUTG

Description

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Usage

Here is a sample session with cutgextract:

% cutgextract

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Command line arguments

   Mandatory qualifiers:
  [-directory]         dirlist    CUTG directory

   Optional qualifiers: (none)
   Advanced qualifiers:
   -wildspec           string     Type of codon file

   General qualifiers:
  -help                boolean    Report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose


EMBOSS An error in ajacd.c at line 11074: unknown attribute 'name' for 'directory'

Input file format

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Output file format

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Data files

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Notes

None.

References

None.

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It always exits with status 0.

Known bugs

None.

See also

Program nameDescription
aaindexextractExtract data from AAINDEX
domainerReads protein coordinate files and writes domains coordinate files
funkyReads clean coordinate files and writes file of protein-heterogen contact data
groupsRemoves redundant hits from a scop families file
hetparseConverts raw dictionary of heterogen groups to a file in embl-like format
nrscopeConverts redundant EMBL-format SCOP file to non-redundant one
pdbparseParses pdb files and writes cleaned-up protein coordinate files
pdbtospConvert raw swissprot:pdb equivalence file to embl-like format
printsextractExtract data from PRINTS
prosextractBuilds the PROSITE motif database for patmatmotifs to search
rebaseextractExtract data from REBASE
scopeConvert raw scop classification file to embl-like format
scopnrRemoves redundant domains from a scop classification file
scopparseConverts raw scop classification files to a file in embl-like format
scopseqsAdds pdb and swissprot sequence records to a scop classification file
tfextractExtract data from TRANSFAC

Author(s)

This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk) **************** EDIT HERE ****************

History

Written (date) - author. **************** EDIT HERE ****************

Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

Comments