UTILS DATABASE CREATION

 

Program nameDescription
aaindexextract Extract data from AAINDEX
cutgextract Extract data from CUTG
domainer Reads protein coordinate files and writes domains coordinate files
funky Reads clean coordinate files and writes file of protein-heterogen contact data
groups Removes redundant hits from a scop families file
hetparse Converts raw dictionary of heterogen groups to a file in embl-like format
nrscope Converts redundant EMBL-format SCOP file to non-redundant one
pdbparse Parses pdb files and writes cleaned-up protein coordinate files
pdbtosp Convert raw swissprot:pdb equivalence file to embl-like format
printsextract Extract data from PRINTS
prosextract Builds the PROSITE motif database for patmatmotifs to search
rebaseextract Extract data from REBASE
scope Convert raw scop classification file to embl-like format
scopnr Removes redundant domains from a scop classification file
scopparse Converts raw scop classification files to a file in embl-like format
scopseqs Adds pdb and swissprot sequence records to a scop classification file
tfextract Extract data from TRANSFAC