Program name | Description |
aaindexextract |
Extract data from AAINDEX
|
cutgextract |
Extract data from CUTG
|
domainer |
Reads protein coordinate files and writes domains coordinate files
|
funky |
Reads clean coordinate files and writes file of protein-heterogen contact data
|
groups |
Removes redundant hits from a scop families file
|
hetparse |
Converts raw dictionary of heterogen groups to a file in embl-like format
|
nrscope |
Converts redundant EMBL-format SCOP file to non-redundant one
|
pdbparse |
Parses pdb files and writes cleaned-up protein coordinate files
|
pdbtosp |
Convert raw swissprot:pdb equivalence file to embl-like format
|
printsextract |
Extract data from PRINTS
|
prosextract |
Builds the PROSITE motif database for patmatmotifs to search
|
rebaseextract |
Extract data from REBASE
|
scope |
Convert raw scop classification file to embl-like format
|
scopnr |
Removes redundant domains from a scop classification file
|
scopparse |
Converts raw scop classification files to a file in embl-like format
|
scopseqs |
Adds pdb and swissprot sequence records to a scop classification file
|
tfextract |
Extract data from TRANSFAC
|