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geecee |
It reads in nucleic acid sequences, sums the number of 'G' and 'C' bases and writes out the result as the fraction (in the interval 0.0 to 1.0) of the length of the whole sequence.
% geecee embl:hhtetra Output file [hhtetra.geecee]:
Mandatory qualifiers: [-sequence] seqall Sequence database USA [-outfile] outfile Output file name Optional qualifiers: (none) Advanced qualifiers: (none) General qualifiers: -help boolean Report command line options. More information on associated and general qualifiers can be found with -help -verbose |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-sequence] (Parameter 1) |
Sequence database USA | Readable sequence(s) | Required |
[-outfile] (Parameter 2) |
Output file name | Output file | <sequence>.geecee |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
#Sequence GC content HHTETRA 0.53
The first non-blank line is the title line. Subsequent lines consist of two columns of data.
Program name | Description |
---|---|
cpgplot | Plot CpG rich areas |
cpgreport | Reports all CpG rich regions |
newcpgreport | Report CpG rich areas |
newcpgseek | Reports CpG rich regions |
Completed 18th June 1999. Last Modified 18th July 1999.