option: -O [with ORF finder]
default: alignment computed on DNA level
usage: dialign-t -O <conf-dir> <input-file> [output-file]
WARNING: Do not use -D in this case although it is DNA input!
DNA sequences will be translated into aminoacids. The reading frame for each sequence is calculated due to its Longest Open Reading Frame. The aminoacids will be aligned and then retranslated into DNA sequences for output.
option: -L [only ORF]
default: alignment computed on DNA level
usage: dialign-t -L <conf-dir> <input-file> [output-file]
WARNING: Do not use -D in this case although it is DNA input!
DNA sequences will be translated into aminoacids. Only the Longest Open Reading Frame of each sequence will be aligned. Retranslation into DNA Sequences for output.