multigroup.vaccine: Analyze Outbreak Models of Multi-Group Populations with Vaccination
Model infectious disease dynamics in populations with multiple subgroups having different vaccination rates, transmission characteristics, and contact patterns. Calculate final and intermediate outbreak sizes, form age-structured contact models with automatic fetching of U.S. census data, and explore vaccination scenarios with an interactive 'shiny' dashboard for a model with two subgroups, as described in Nguyen et al. (2024) <doi:10.1016/j.jval.2024.03.039> and Duong et al. (2026) <doi:10.1093/ofid/ofaf695.217>.
| Version: | 0.1.1 |
| Depends: | R (≥ 2.10) |
| Imports: | deSolve, graphics, shiny, stats, bslib (≥ 0.9.0), htmltools, socialmixr |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2026-02-09 |
| DOI: | 10.32614/CRAN.package.multigroup.vaccine (may not be active yet) |
| Author: | Damon Toth  [aut,
cre, cph],
Jake Wagoner
[aut],
Willy Ray [aut],
George Vega Yon
[ctb],
Centers for Disease Control and Prevention's Center for Forecasting and
Outbreak Analytics [fnd] (Cooperative agreement CDC-RFA-FT-23-0069) |
| Maintainer: | Damon Toth <damon.toth at hsc.utah.edu> |
| License: | MIT + file LICENSE |
| URL: | https://epiforesite.github.io/multigroup-vaccine/ |
| NeedsCompilation: | no |
| Citation: | multigroup.vaccine citation info |
| Materials: | README, NEWS |
| CRAN checks: | multigroup.vaccine results |
Documentation:
| Reference manual: | multigroup.vaccine.html , multigroup.vaccine.pdf |
| Vignettes: |
Using Census Data Functions (source, R code) Contact Matrix Examples (source, R code) Measles Age-Structured Model (source, R code) Getting Started Example (source, R code) |
Downloads:
| Package source: | multigroup.vaccine_0.1.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): multigroup.vaccine_0.1.1.tgz, r-oldrel (arm64): multigroup.vaccine_0.1.1.tgz, r-release (x86_64): multigroup.vaccine_0.1.1.tgz, r-oldrel (x86_64): multigroup.vaccine_0.1.1.tgz |
Linking:
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