Last updated on 2026-01-18 19:50:42 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [98s/226s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.519, system: 0.039, elapsed: 2.538 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.541, system: 0.069, elapsed: 13.755 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.016, elapsed: 0.469 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.517, system: 0.634, elapsed: 28.709 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.004, elapsed: 0.179 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.540, system: 0.781, elapsed: 46.473 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.547, system: 0.032, elapsed: 2.145 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.495, system: 0.081, elapsed: 11.700 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.016, elapsed: 1.205 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.553, system: 0.654, elapsed: 56.774 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.003, elapsed: 0.174 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.545, system: 0.805, elapsed: 72.979 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.545, system: 0.031, elapsed: 1.962 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.671, system: 0.092, elapsed: 15.681 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.308, system: 0.017, elapsed: 1.239 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.217, system: 0.761, elapsed: 21.976 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.010, elapsed: 0.245 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.261, system: 0.350, elapsed: 1.050 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.942, system: 1.305, elapsed: 42.991 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.631, system: 0.046, elapsed: 1.820 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.625, system: 0.112, elapsed: 11.438 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.015, elapsed: 0.335 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.890, system: 0.686, elapsed: 30.852 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.003, elapsed: 0.179 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.302, system: 0.567, elapsed: 11.999 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.593, system: 1.460, elapsed: 57.416 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/237s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.578, system: 0.037, elapsed: 4.545 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.599, system: 0.053, elapsed: 27.717 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.015, elapsed: 0.593 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.292, system: 0.412, elapsed: 12.958 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.004, elapsed: 0.525 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.414, system: 0.544, elapsed: 48.009 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.586, system: 0.032, elapsed: 4.415 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.642, system: 0.061, elapsed: 26.765 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.013, elapsed: 0.564 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.402, system: 0.421, elapsed: 13.228 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.004, elapsed: 0.476 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.560, system: 0.549, elapsed: 47.069 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.575, system: 0.031, elapsed: 4.528 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.707, system: 0.065, elapsed: 27.129 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.013, elapsed: 0.664 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.323, system: 0.416, elapsed: 13.117 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.003, elapsed: 0.470 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.203, system: 0.318, elapsed: 2.286 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.855, system: 0.870, elapsed: 50.135 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.589, system: 0.032, elapsed: 4.311 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.727, system: 0.088, elapsed: 26.550 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.204, system: 0.015, elapsed: 0.543 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.288, system: 0.411, elapsed: 12.082 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.003, elapsed: 0.456 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.936, system: 0.594, elapsed: 30.825 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.584, system: 1.167, elapsed: 76.621 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64