Last updated on 2025-09-29 16:50:32 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/190s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.526, system: 0.049, elapsed: 2.948 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.290, system: 0.162, elapsed: 21.249 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.023, elapsed: 0.419 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.069, system: 0.346, elapsed: 10.537 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.008, elapsed: 0.289 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.827, system: 0.665, elapsed: 36.748 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.718, system: 0.087, elapsed: 4.311 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.570, system: 0.328, elapsed: 28.669 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.026, elapsed: 0.494 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.194, system: 0.432, elapsed: 11.957 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.008, elapsed: 0.389 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.532, system: 1.240, elapsed: 48.232 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.685, system: 0.072, elapsed: 3.315 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.360, system: 0.213, elapsed: 20.485 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.025, elapsed: 0.499 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.950, system: 0.301, elapsed: 8.197 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.007, elapsed: 0.290 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.267, system: 0.275, elapsed: 1.715 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.338, system: 1.145, elapsed: 36.595 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.688, system: 0.075, elapsed: 4.065 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.285, system: 0.198, elapsed: 19.323 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.019, elapsed: 0.314 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.112, system: 0.344, elapsed: 8.468 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.011, elapsed: 0.384 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.835, system: 0.725, elapsed: 20.794 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.992, system: 1.435, elapsed: 54.763 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [90s/256s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.783, system: 0.132, elapsed: 4.590 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.591, system: 0.364, elapsed: 27.139 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.026, elapsed: 0.504 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.907, system: 0.309, elapsed: 11.026 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.008, elapsed: 0.478 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.323, system: 1.187, elapsed: 46.244 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.718, system: 0.085, elapsed: 6.198 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.590, system: 0.420, elapsed: 29.954 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.032, elapsed: 0.749 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.053, system: 0.389, elapsed: 12.465 seconds]
Computing values for grid cells...
... done. [user: 0.192, system: 0.018, elapsed: 0.637 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.407, system: 1.282, elapsed: 53.570 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.777, system: 0.089, elapsed: 6.004 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.469, system: 0.353, elapsed: 26.762 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.035, elapsed: 1.485 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.917, system: 0.357, elapsed: 15.150 seconds]
Computing values for grid cells...
... done. [user: 0.196, system: 0.027, elapsed: 0.616 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.142, system: 0.341, elapsed: 1.962 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.498, system: 1.663, elapsed: 56.689 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.519, system: 0.052, elapsed: 3.690 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.590, system: 0.394, elapsed: 27.059 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.038, elapsed: 0.726 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.059, system: 0.428, elapsed: 11.509 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.013, elapsed: 0.546 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.829, system: 0.934, elapsed: 35.512 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.198, system: 2.308, elapsed: 82.406 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64